RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 C1GALT1Q9NS00 363 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 ARID3CA6NKF2 412 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 NDUFB5O43674 189 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 NETO1Q8TDF5 533 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 WDR18Q9BV38 432 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 ATXN3LQ9H3M9 355 aa6.07□□□□□ -1.44
NUP54-208ENST00000508604 CPNE3O75131 537 aaKnown RBP6.06□□□□□ -1.44
NUP54-208ENST00000508604 ITPKAP23677 461 aa6.06□□□□□ -1.44
NUP54-208ENST00000508604 PTPN12Q05209 780 aaKnown RBP6.06□□□□□ -1.44
NUP54-208ENST00000508604 COL19A1Q14993 1142 aa6.06□□□□□ -1.44
NUP54-208ENST00000508604 ZNF792Q3KQV3 632 aa6.06□□□□□ -1.44
NUP54-208ENST00000508604 SEZ6L2Q6UXD5 910 aa6.06□□□□□ -1.44
NUP54-208ENST00000508604 EGFL7Q9UHF1 273 aa6.06□□□□□ -1.44
NUP54-208ENST00000508604 ECEL1O95672 775 aa6.05□□□□□ -1.44
NUP54-208ENST00000508604 PKN1Q16512 942 aa6.05□□□□□ -1.44
NUP54-208ENST00000508604 LCE1DQ5T752 114 aa6.05□□□□□ -1.44
NUP54-208ENST00000508604 GLYCTKQ8IVS8 523 aa6.05□□□□□ -1.44
NUP54-208ENST00000508604 DYNC1LI2O43237 492 aaPredicted RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 PAPLNO95428 1278 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 FAM87AP0C7U9 286 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 RPS26P11Q5JNZ5 115 aaPredicted RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 ZNF574Q6ZN55 896 aaPredicted RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 NPHS2Q9NP85 383 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 PPP1R9AQ9ULJ8 1098 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 TRAK1Q9UPV9 953 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 ICMTO60725 284 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 RNGTTO60942 597 aaKnown RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 GADD45BO75293 160 aaPredicted RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 FARP2O94887 1054 aaPredicted RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 LIG1P18858 919 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 ID3Q02535 119 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 USPL1Q5W0Q7 1092 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 ATG4DQ86TL0 474 aaPredicted RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 RC3H2Q9HBD1 1191 aaKnown RBP6.04□□□□□ -1.44
NUP54-208ENST00000508604 VAV3Q9UKW4 847 aa6.04□□□□□ -1.44
NUP54-208ENST00000508604 H3BRB1 525 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 TMPRSS2O15393 492 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 BNIP3Q12983 259 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 SPRED2Q7Z698 418 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 SMYD4Q8IYR2 804 aaPredicted RBP6.03□□□□□ -1.44
NUP54-208ENST00000508604 CCDC82Q8N4S0 544 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 PI4K2BQ8TCG2 481 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 TUT1Q9H6E5 874 aaKnown RBP6.03□□□□□ -1.44
NUP54-208ENST00000508604 PPP4R2Q9NY27 417 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 CRIM1Q9NZV1 1036 aa6.03□□□□□ -1.44
NUP54-208ENST00000508604 FUT4P22083 530 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 PRKCQQ04759 706 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 PPP2R3AQ06190 1150 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 CDK5R2Q13319 367 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 IFI16Q16666 785 aaKnown RBP6.02□□□□□ -1.45
NUP54-208ENST00000508604 ZNF648Q5T619 568 aaPredicted RBP6.02□□□□□ -1.45
NUP54-208ENST00000508604 PHLDB3Q6NSJ2 640 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 PLD6Q8N2A8 252 aaKnown RBP6.02□□□□□ -1.45
NUP54-208ENST00000508604 TMC1Q8TDI8 760 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 FANCD2OSQ96PS1 177 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 SLC38A3Q99624 504 aa6.02□□□□□ -1.45
NUP54-208ENST00000508604 ZC3H12CQ9C0D7 883 aaKnown RBP6.02□□□□□ -1.45
NUP54-208ENST00000508604 SSU72Q9NP77 194 aaKnown RBP6.02□□□□□ -1.45
NUP54-208ENST00000508604 KSR1Q8IVT5 923 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 FAM168AQ92567 244 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 HRASLS5Q96KN8 279 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 CITED4Q96RK1 184 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 KRTAP9-8Q9BYQ0 159 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 DNAJC25Q9H1X3 360 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 MKNK2Q9HBH9 465 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 KRT82Q9NSB4 513 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 PCOLCE2Q9UKZ9 415 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 TMEM238LA0A1B0GVL6 79 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 CD8BP10966 210 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 ZNF157P51786 506 aaPredicted RBP6.01□□□□□ -1.45
NUP54-208ENST00000508604 ORC1Q13415 861 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 PRPF40BQ6NWY9 871 aaKnown RBP6.01□□□□□ -1.45
NUP54-208ENST00000508604 FAM181AQ8N9Y4 354 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 CCDC74AQ96AQ1 378 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 CCDC86Q9H6F5 360 aaKnown RBP6.01□□□□□ -1.45
NUP54-208ENST00000508604 ABCB6Q9NP58 842 aa6.01□□□□□ -1.45
NUP54-208ENST00000508604 TMEM265A0A087WTH1 108 aa6□□□□□ -1.45
NUP54-208ENST00000508604 DBX1A6NMT0 343 aa6□□□□□ -1.45
NUP54-208ENST00000508604 GSTP1P09211 210 aaKnown RBP6□□□□□ -1.45
NUP54-208ENST00000508604 AOC3Q16853 763 aa6□□□□□ -1.45
NUP54-208ENST00000508604 DTHD1Q6ZMT9 781 aa6□□□□□ -1.45
NUP54-208ENST00000508604 TMEM40Q8WWA1 233 aa6□□□□□ -1.45
NUP54-208ENST00000508604 GPN3Q9UHW5 284 aaPredicted RBP6□□□□□ -1.45
NUP54-208ENST00000508604 TTLL4Q14679 1199 aa5.99□□□□□ -1.45
NUP54-208ENST00000508604 KIF4BQ2VIQ3 1234 aa5.99□□□□□ -1.45
NUP54-208ENST00000508604 ANGEL2Q5VTE6 544 aaKnown RBP5.99□□□□□ -1.45
NUP54-208ENST00000508604 KCNB2Q92953 911 aa5.99□□□□□ -1.45
NUP54-208ENST00000508604 WDR89Q96FK6 387 aaPredicted RBP5.99□□□□□ -1.45
NUP54-208ENST00000508604 KRTAP4-7Q9BYR0 210 aa5.99□□□□□ -1.45
NUP54-208ENST00000508604 CEACAM5P06731 702 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 RNASE1P07998 156 aaKnown RBP5.98□□□□□ -1.45
NUP54-208ENST00000508604 HCLS1P14317 486 aaPredicted RBP5.98□□□□□ -1.45
NUP54-208ENST00000508604 GLIS3Q8NEA6 775 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 FAM129BQ96TA1 746 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 DISC1Q9NRI5 854 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 TMEM39AQ9NV64 488 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 USTQ9Y2C2 406 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 CARMIL2Q6F5E8 1435 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 CARNS1A5YM72 827 aa5.98□□□□□ -1.45
NUP54-208ENST00000508604 EIF1AYO14602 144 aaKnown RBP5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms