RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 CCT6AP40227 531 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 RNASE9P60153 205 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC82Q8N4S0 544 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 TACO1Q9BSH4 297 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 TEX13AQ9BXU3 409 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 TRIM6Q9C030 488 aaPredicted RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 YIPF3Q9GZM5 350 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 PPANQ9NQ55 473 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 KLC4Q9NSK0 619 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 HAUS2Q9NVX0 235 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 HPCAL4Q9UM19 191 aa8.26□□□□□ -1.09
LIMCH1-207ENST00000508466 SYNJ2O15056 1496 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 SHTN1A0MZ66 631 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CHL1O00533 1208 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CTAGE5O15320 804 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 PRPF6O94906 941 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 BMP6P22004 513 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CXCR5P32302 372 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 NLRP12P59046 1061 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 SF3B2Q13435 895 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 KCNB1Q14721 858 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CEP85LQ5SZL2 805 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 ANKRD18AQ8IVF6 992 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 NBPF3Q9H094 633 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 L3MBTL1Q9Y468 752 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 NFE2L3Q9Y4A8 694 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 KIAA0232Q92628 1395 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 MAGI1Q96QZ7 1491 aaPredicted RBP8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CTAGE9A4FU28 777 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 C2orf54Q08AI8 447 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 NUTM2GQ5VZR2 741 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 TTC37Q6PGP7 1564 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CLASRPQ8N2M8 674 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 RUFY2Q8WXA3 655 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 NEK1Q96PY6 1258 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 FAM167BQ9BTA0 163 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 C14orf93Q9H972 538 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 CPSF2Q9P2I0 782 aaKnown RBP8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 PCDHA5Q9Y5H7 936 aa8.25□□□□□ -1.09
LIMCH1-207ENST00000508466 SYCP2Q9BX26 1530 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 YTHDC2Q9H6S0 1430 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 DCAF8L1A6NGE4 600 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 PSMA5P28066 241 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 CAGE1Q8TC20 777 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 MAP4K1Q92918 833 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC114Q96M63 670 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 GGT7Q9UJ14 662 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 MCM8Q9UJA3 840 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 MAPK8IP1Q9UQF2 711 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 DUSP10Q9Y6W6 482 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 RIMS2Q9UQ26 1411 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 ESYT3A0FGR9 886 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 SPTLC2O15270 562 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 CPP00450 1065 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC175P0C221 793 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 CASP14P31944 242 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC181Q5TID7 509 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 DDX46Q7L014 1031 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 NSUN7Q8NE18 718 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 EAF2Q96CJ1 260 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 BAIAP2L1Q9UHR4 511 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 ATP10BO94823 1461 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 MROH7-TTC4A0A0A0MT08 1334 aa8.24□□□□□ -1.09
LIMCH1-207ENST00000508466 PI4KAP2A4QPH2 592 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 GOLGA6BA6NDN3 693 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 KIF28PB7ZC32 967 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CAVIN2O95810 425 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 MYL5Q02045 173 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 GRIN1Q05586 938 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 AIMP1Q12904 312 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CWF19L2Q2TBE0 894 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 STOX1Q6ZVD7 989 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 PI4KAP1Q8N8J0 262 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SPDYE1Q8NFV5 336 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 ECHDC1Q9NTX5 307 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 ADGRG1Q9Y653 693 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 MADDQ8WXG6 1647 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CROCC2H7BZ55 1655 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CCP110O43303 1012 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 PFKFB2O60825 505 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 RPS6KA5O75582 802 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 GLRX3O76003 335 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CYP21A2P08686 494 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 ERCC3P19447 782 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SYKP43405 635 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 FNTAP49354 379 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 HDLBPQ00341 1268 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SYNE3Q6ZMZ3 975 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 FAM228AQ86W67 206 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 MICAL1Q8TDZ2 1067 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 LBHD1Q9BQE6 289 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 SELENOOQ9BVL4 669 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 PBRM1Q86U86 1689 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 RAPGEF6Q8TEU7 1601 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 EIF2AK4Q9P2K8 1649 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 ATP1A1P05023 1023 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 USP8P40818 1118 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 MTHFSDQ2M296 383 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 CCDC40Q4G0X9 1142 aa8.23□□□□□ -1.09
LIMCH1-207ENST00000508466 MYSM1Q5VVJ2 828 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms