RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SREBF2Q12772 1141 aa20.85■□□□□ 0.93
VIM-205ENST00000485947 TFCP2Q12800 502 aa20.85■□□□□ 0.93
VIM-205ENST00000485947 APOBEC3HQ6NTF7 200 aaKnown RBP20.85■□□□□ 0.93
VIM-205ENST00000485947 GPR108Q9NPR9 543 aa20.85■□□□□ 0.93
VIM-205ENST00000485947 TIMM10P62072 90 aa20.84■□□□□ 0.93
VIM-205ENST00000485947 NBPF12Q5TAG4 269 aaPredicted RBP20.84■□□□□ 0.93
VIM-205ENST00000485947 SPTY2D1Q68D10 685 aaPredicted RBP20.84■□□□□ 0.93
VIM-205ENST00000485947 SLF2Q8IX21 1173 aa20.84■□□□□ 0.93
VIM-205ENST00000485947 ANKRD13AQ8IZ07 590 aa20.84■□□□□ 0.93
VIM-205ENST00000485947 SLC10A4Q96EP9 437 aa20.84■□□□□ 0.93
VIM-205ENST00000485947 XAGE2Q96GT9 111 aa20.84■□□□□ 0.93
VIM-205ENST00000485947 RNF186Q9NXI6 227 aa20.84■□□□□ 0.93
VIM-205ENST00000485947 AOX1Q06278 1338 aa20.83■□□□□ 0.93
VIM-205ENST00000485947 IGSF3O75054 1194 aa20.83■□□□□ 0.93
VIM-205ENST00000485947 SPRYD7Q5W111 196 aa20.83■□□□□ 0.93
VIM-205ENST00000485947 TEPSINQ96N21 525 aa20.83■□□□□ 0.93
VIM-205ENST00000485947 SSC5DA1L4H1 1573 aa20.82■□□□□ 0.92
VIM-205ENST00000485947 USP2O75604 605 aaPredicted RBP20.82■□□□□ 0.92
VIM-205ENST00000485947 NOM1Q5C9Z4 860 aaKnown RBP20.82■□□□□ 0.92
VIM-205ENST00000485947 NOP58Q9Y2X3 529 aaKnown RBP20.82■□□□□ 0.92
VIM-205ENST00000485947 RPAP1Q9BWH6 1393 aaPredicted RBP20.82■□□□□ 0.92
VIM-205ENST00000485947 MANSC4A6NHS7 340 aaPredicted RBP20.81■□□□□ 0.92
VIM-205ENST00000485947 TCP10L2B9ZVM9 353 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 ALDH1A1P00352 501 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 ADORA1P30542 326 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 RASGRF1Q13972 1273 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 PRKG1Q13976 671 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 HSP90AB4PQ58FF6 505 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 FAM163AQ96GL9 167 aaPredicted RBP20.81■□□□□ 0.92
VIM-205ENST00000485947 CFHR5Q9BXR6 569 aa20.81■□□□□ 0.92
VIM-205ENST00000485947 TRPA1O75762 1119 aa20.8■□□□□ 0.92
VIM-205ENST00000485947 UQCRFS1P1P0C7P4 283 aa20.8■□□□□ 0.92
VIM-205ENST00000485947 PRDX5P30044 214 aa20.8■□□□□ 0.92
VIM-205ENST00000485947 GORABQ5T7V8 394 aa20.8■□□□□ 0.92
VIM-205ENST00000485947 NEUROD6Q96NK8 337 aa20.8■□□□□ 0.92
VIM-205ENST00000485947 ARID4AP29374 1257 aaPredicted RBP20.79■□□□□ 0.92
VIM-205ENST00000485947 NUCB1Q02818 461 aa20.79■□□□□ 0.92
VIM-205ENST00000485947 TMEM39BQ9GZU3 492 aa20.79■□□□□ 0.92
VIM-205ENST00000485947 DAGLAQ9Y4D2 1042 aa20.79■□□□□ 0.92
VIM-205ENST00000485947 MYH13Q9UKX3 1938 aa20.78■□□□□ 0.92
VIM-205ENST00000485947 RAB11FIP3O75154 756 aa20.78■□□□□ 0.92
VIM-205ENST00000485947 SURF6O75683 361 aaKnown RBP20.78■□□□□ 0.92
VIM-205ENST00000485947 MAP4K4O95819 1239 aaPredicted RBP20.78■□□□□ 0.92
VIM-205ENST00000485947 DGKZQ13574 1117 aa20.78■□□□□ 0.92
VIM-205ENST00000485947 DCAF15Q66K64 600 aa20.78■□□□□ 0.92
VIM-205ENST00000485947 FAM151AQ8WW52 585 aa20.78■□□□□ 0.92
VIM-205ENST00000485947 ZBTB47Q9UFB7 747 aaPredicted RBP20.78■□□□□ 0.92
VIM-205ENST00000485947 AKAP11Q9UKA4 1901 aa20.77■□□□□ 0.92
VIM-205ENST00000485947 MAP3K9P80192 1104 aa20.77■□□□□ 0.92
VIM-205ENST00000485947 OS9Q13438 667 aaPredicted RBP20.77■□□□□ 0.92
VIM-205ENST00000485947 DZIP1Q86YF9 867 aaKnown RBP20.77■□□□□ 0.92
VIM-205ENST00000485947 WNK4Q96J92 1243 aa20.77■□□□□ 0.92
VIM-205ENST00000485947 ZNF512BQ96KM6 892 aaPredicted RBP20.77■□□□□ 0.92
VIM-205ENST00000485947 GAKO14976 1311 aa20.77■□□□□ 0.91
VIM-205ENST00000485947 DIXDC1Q155Q3 683 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 TNNI3KQ59H18 835 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 CCDC158Q5M9N0 1113 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 ANKRD45Q5TZF3 282 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 CDC42EP5Q6NZY7 148 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 ERICH6Q7L0X2 663 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 CHD1LQ86WJ1 897 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 ERC1Q8IUD2 1116 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 SPATA5Q8NB90 893 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 CSADQ9Y600 493 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 FPGT-TNNI3KV9GXZ4 949 aa20.76■□□□□ 0.91
VIM-205ENST00000485947 LDHCP07864 332 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 GSTO1P78417 241 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 OTUD7BQ6GQQ9 843 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.75■□□□□ 0.91
VIM-205ENST00000485947 CLMNQ96JQ2 1002 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 IDI2Q9BXS1 227 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 HMG20BQ9P0W2 317 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 ABCF2Q9UG63 623 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 EXOC6BQ9Y2D4 811 aa20.75■□□□□ 0.91
VIM-205ENST00000485947 ENTPD3O75355 529 aa20.74■□□□□ 0.91
VIM-205ENST00000485947 CACNB3P54284 484 aa20.74■□□□□ 0.91
VIM-205ENST00000485947 USP40Q9NVE5 1235 aa20.74■□□□□ 0.91
VIM-205ENST00000485947 FZD1Q9UP38 647 aa20.74■□□□□ 0.91
VIM-205ENST00000485947 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.74■□□□□ 0.91
VIM-205ENST00000485947 TESPA1A2RU30 521 aaPredicted RBP20.73■□□□□ 0.91
VIM-205ENST00000485947 NPM3O75607 178 aaKnown RBP20.73■□□□□ 0.91
VIM-205ENST00000485947 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.73■□□□□ 0.91
VIM-205ENST00000485947 KIF1BPQ96EK5 621 aa20.73■□□□□ 0.91
VIM-205ENST00000485947 LRRCC1Q9C099 1032 aa20.73■□□□□ 0.91
VIM-205ENST00000485947 IFNL1Q8IU54 200 aa20.72■□□□□ 0.91
VIM-205ENST00000485947 ZNF341Q9BYN7 854 aa20.72■□□□□ 0.91
VIM-205ENST00000485947 GPR75-ASB3A0A0A6YYF3 556 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 MECOMQ03112 1051 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 MKRN3Q13064 507 aaKnown RBP20.71■□□□□ 0.91
VIM-205ENST00000485947 VGLL4Q14135 290 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 TMED8Q6PL24 325 aaPredicted RBP20.71■□□□□ 0.91
VIM-205ENST00000485947 CDAN1Q8IWY9 1227 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 OPTNQ96CV9 577 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 LNPKQ9C0E8 428 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 MROH7-TTC4A0A0A0MT08 1334 aa20.71■□□□□ 0.91
VIM-205ENST00000485947 SPDYE5A6NIY4 337 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 MCAMP43121 646 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 GTF2A2P52657 109 aa20.7■□□□□ 0.9
VIM-205ENST00000485947 PKN2Q16513 984 aaKnown RBP20.7■□□□□ 0.9
VIM-205ENST00000485947 TTC39AQ5SRH9 613 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms