RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 OLFM4Q6UX06 510 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 DPP8Q6V1X1 898 aaPredicted RBP9.09□□□□□ -0.95
USP4-211ENST00000485450 SNRKQ9NRH2 765 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 FAM53CQ9NYF3 392 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 ZNF330Q9Y3S2 320 aaPredicted RBP9.09□□□□□ -0.95
USP4-211ENST00000485450 HSP90AB4PQ58FF6 505 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 PLCD4Q9BRC7 762 aa9.09□□□□□ -0.95
USP4-211ENST00000485450 CTIFO43310 598 aaKnown RBP9.08□□□□□ -0.96
USP4-211ENST00000485450 SATB1Q01826 763 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 C9orf131Q5VYM1 1079 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 CCDC24Q8N4L8 307 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 ZC3H15Q8WU90 426 aaKnown RBP9.08□□□□□ -0.96
USP4-211ENST00000485450 TRERF1Q96PN7 1200 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 KIF2CQ99661 725 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 UNCXA6NJT0 531 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 GYS2P54840 703 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 MAP3K10Q02779 954 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 GCC1Q96CN9 775 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 TSPYL1Q9H0U9 437 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 ZNF446Q9NWS9 450 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 RAD50Q92878 1312 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 CCDC172P0C7W6 258 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 SLC4A10Q6U841 1118 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 TXNRD3Q86VQ6 643 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 RBM46Q8TBY0 533 aaKnown RBP9.08□□□□□ -0.96
USP4-211ENST00000485450 MYCBPQ99417 103 aaPredicted RBP9.08□□□□□ -0.96
USP4-211ENST00000485450 TMX1Q9H3N1 280 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 CTNNA3Q9UI47 895 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 BCS1LQ9Y276 419 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 AKAP2Q9Y2D5 859 aa9.08□□□□□ -0.96
USP4-211ENST00000485450 ECE2O60344 883 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 KLRK1P26718 216 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 RAD51AP2Q09MP3 1159 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 TNNI3KQ59H18 835 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 MCTP1Q6DN14 999 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 CD209Q9NNX6 404 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 FPGT-TNNI3KV9GXZ4 949 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 CYP2E1P05181 493 aaPredicted RBP9.07□□□□□ -0.96
USP4-211ENST00000485450 FKBP1CQ5VVH2 108 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 RSBN1LQ6PCB5 846 aaPredicted RBP9.07□□□□□ -0.96
USP4-211ENST00000485450 USP50Q70EL3 339 aaPredicted RBP9.07□□□□□ -0.96
USP4-211ENST00000485450 METTL16Q86W50 562 aaKnown RBP9.07□□□□□ -0.96
USP4-211ENST00000485450 MYH8P13535 1937 aa9.07□□□□□ -0.96
USP4-211ENST00000485450 CD2BP2O95400 341 aaKnown RBP9.06□□□□□ -0.96
USP4-211ENST00000485450 ZNF594Q96JF6 807 aaPredicted RBP9.06□□□□□ -0.96
USP4-211ENST00000485450 RSPH14Q9UHP6 348 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 INHBEP58166 350 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 FSTL1Q12841 308 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 WASHC4Q2M389 1173 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 LDHAL6AQ6ZMR3 332 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 ITPRIPQ8IWB1 547 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 GPRC5DQ9NZD1 345 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 TTC41PQ6P2S7 1318 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 SRGAP3O43295 1099 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 NUCB2P80303 420 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 AOC3Q16853 763 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 GPT2Q8TD30 523 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 DIAPH3Q9NSV4 1193 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 CALCOCO1Q9P1Z2 691 aa9.06□□□□□ -0.96
USP4-211ENST00000485450 WTIPA6NIX2 430 aaPredicted RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 NUCB1Q02818 461 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 CXCL9Q07325 125 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 TNIP1Q15025 636 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 SYCP1Q15431 976 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 CERS5Q8N5B7 392 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 DDX41Q9UJV9 622 aaKnown RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 SERPINA10Q9UK55 444 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 MORC2Q9Y6X9 1032 aaPredicted RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 RBBP6Q7Z6E9 1792 aaKnown RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 POLR2AP24928 1970 aaKnown RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 GUCY2CP25092 1073 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 ZNF384Q8TF68 577 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 KIF1BPQ96EK5 621 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 ZNF277Q9NRM2 450 aaPredicted RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 HNRNPH2P55795 449 aaKnown RBP9.05□□□□□ -0.96
USP4-211ENST00000485450 HHIPL2Q6UWX4 724 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 ZNF804AQ7Z570 1209 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 HHIPL1Q96JK4 782 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 RLFQ13129 1914 aa9.05□□□□□ -0.96
USP4-211ENST00000485450 HMMRO75330 724 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 UFL1O94874 794 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 ATP5JP18859 108 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 TFCP2Q12800 502 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 TBC1D22AQ8WUA7 517 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 PRDM16Q9HAZ2 1276 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 ZNF236Q9UL36 1845 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 TCRBV5S4A2TA0A5A2 114 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 USP17L3A6NCW0 530 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 USP17L4A6NCW7 530 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 MAP3K11Q16584 847 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 ICE2Q659A1 982 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 USP17L1Q7RTZ2 530 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 PI4K2BQ8TCG2 481 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 RHPN1Q8TCX5 695 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 MPHOSPH8Q99549 860 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 TMEM63CQ9P1W3 806 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 RBM27Q9P2N5 1060 aaKnown RBP9.04□□□□□ -0.96
USP4-211ENST00000485450 DBNLQ9UJU6 430 aaKnown RBP9.04□□□□□ -0.96
USP4-211ENST00000485450 PPP2R3BQ9Y5P8 575 aa9.04□□□□□ -0.96
USP4-211ENST00000485450 ZMYM6O95789 1325 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms