RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 MFSD14AQ96MC6 490 aa6.94□□□□□ -1.3
VPS13A-211ENST00000484581 ZKSCAN3Q9BRR0 538 aa6.94□□□□□ -1.3
VPS13A-211ENST00000484581 EIF4EBP3O60516 100 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-211ENST00000484581 USP11P51784 963 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 VN1R5Q7Z5H4 357 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 NT5DC4Q86YG4 428 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 SNX29Q8TEQ0 813 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 PUS7Q96PZ0 661 aaKnown RBP6.93□□□□□ -1.3
VPS13A-211ENST00000484581 TGIF2Q9GZN2 237 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 RNF19AQ9NV58 838 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 LEMD3Q9Y2U8 911 aa6.93□□□□□ -1.3
VPS13A-211ENST00000484581 HSP90B1P14625 803 aaKnown RBP6.92□□□□□ -1.3
VPS13A-211ENST00000484581 ZNF76P36508 570 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 SGO2Q562F6 1265 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 C9orf131Q5VYM1 1079 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 FBXL6Q8N531 539 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 SMG8Q8ND04 991 aaKnown RBP6.92□□□□□ -1.3
VPS13A-211ENST00000484581 FRMD6Q96NE9 622 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 CSRNP1Q96S65 589 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 SETDB2Q96T68 719 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 TINF2Q9BSI4 451 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 TMPRSS13Q9BYE2 586 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 SOX17Q9H6I2 414 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-211ENST00000484581 PIM2Q9P1W9 311 aa6.92□□□□□ -1.3
VPS13A-211ENST00000484581 FAM95CA0A1B0GW59 222 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 ADAMTS4O75173 837 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 GSTM4Q03013 218 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 NFKBIBQ15653 356 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 EXOSC6Q5RKV6 272 aaKnown RBP6.91□□□□□ -1.3
VPS13A-211ENST00000484581 PAOXQ6QHF9 649 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 FAM177A1Q8N128 213 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-211ENST00000484581 CRELD1Q96HD1 420 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 OSBPL1AQ9BXW6 950 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 KRTAP4-9Q9BYQ8 210 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 CCSER2Q9H7U1 834 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 SUGCTQ9HAC7 445 aa6.91□□□□□ -1.3
VPS13A-211ENST00000484581 LOC100289279A0A1B0GTE1 492 aa6.9□□□□□ -1.3
VPS13A-211ENST00000484581 NEFLP07196 543 aa6.9□□□□□ -1.3
VPS13A-211ENST00000484581 SLC43A3Q8NBI5 491 aa6.9□□□□□ -1.3
VPS13A-211ENST00000484581 BHLHE41Q9C0J9 482 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-211ENST00000484581 DNAJC25Q9H1X3 360 aa6.9□□□□□ -1.3
VPS13A-211ENST00000484581 PPP1R1BQ9UD71 204 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-211ENST00000484581 FOXD3Q9UJU5 478 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-211ENST00000484581 TIAF1O95411 115 aa6.89□□□□□ -1.31
VPS13A-211ENST00000484581 ESRRAP11474 423 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-211ENST00000484581 DRD2P14416 443 aa6.89□□□□□ -1.31
VPS13A-211ENST00000484581 CANXP27824 592 aaKnown RBP6.89□□□□□ -1.31
VPS13A-211ENST00000484581 HOXA10P31260 410 aaPredicted RBP6.89□□□□□ -1.31
VPS13A-211ENST00000484581 YIPF2Q9BWQ6 316 aa6.89□□□□□ -1.31
VPS13A-211ENST00000484581 ZFYVE28Q9HCC9 887 aa6.89□□□□□ -1.31
VPS13A-211ENST00000484581 ANGEL1Q9UNK9 670 aaKnown RBP6.89□□□□□ -1.31
VPS13A-211ENST00000484581 AK5Q9Y6K8 562 aa6.89□□□□□ -1.31
VPS13A-211ENST00000484581 EIF1AYO14602 144 aaKnown RBP6.88□□□□□ -1.31
VPS13A-211ENST00000484581 ORC1Q13415 861 aa6.88□□□□□ -1.31
VPS13A-211ENST00000484581 FBLIM1Q8WUP2 373 aa6.88□□□□□ -1.31
VPS13A-211ENST00000484581 LATS2Q9NRM7 1088 aa6.88□□□□□ -1.31
VPS13A-211ENST00000484581 NLRP2Q9NX02 1062 aa6.88□□□□□ -1.31
VPS13A-211ENST00000484581 SPG7Q9UQ90 795 aa6.88□□□□□ -1.31
VPS13A-211ENST00000484581 DLGAP3O95886 979 aa6.87□□□□□ -1.31
VPS13A-211ENST00000484581 F13BP05160 661 aa6.87□□□□□ -1.31
VPS13A-211ENST00000484581 POLR3DP05423 398 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-211ENST00000484581 FOSL1P15407 271 aa6.87□□□□□ -1.31
VPS13A-211ENST00000484581 SOX4Q06945 474 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-211ENST00000484581 CPSF6Q16630 551 aaKnown RBP eCLIP6.87□□□□□ -1.31
VPS13A-211ENST00000484581 PEAR1Q5VY43 1037 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-211ENST00000484581 METTL22Q9BUU2 404 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-211ENST00000484581 TANGO6Q9C0B7 1094 aa6.87□□□□□ -1.31
VPS13A-211ENST00000484581 METTL12A8MUP2 240 aa6.86□□□□□ -1.31
VPS13A-211ENST00000484581 CPNE3O75131 537 aaKnown RBP6.86□□□□□ -1.31
VPS13A-211ENST00000484581 CTSHP09668 335 aa6.86□□□□□ -1.31
VPS13A-211ENST00000484581 GNL2Q13823 731 aaKnown RBP6.86□□□□□ -1.31
VPS13A-211ENST00000484581 HP1BP3Q5SSJ5 553 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-211ENST00000484581 CDPF1Q6NVV7 123 aa6.86□□□□□ -1.31
VPS13A-211ENST00000484581 SPATA32Q96LK8 384 aa6.86□□□□□ -1.31
VPS13A-211ENST00000484581 ZFYVE1Q9HBF4 777 aa6.86□□□□□ -1.31
VPS13A-211ENST00000484581 CAPN10Q9HC96 672 aa6.86□□□□□ -1.31
VPS13A-211ENST00000484581 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-211ENST00000484581 A0A096LPE4 126 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 A0A1W2PPZ6 126 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 CYP11A1P05108 521 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 EIF4BP23588 611 aaKnown RBP6.85□□□□□ -1.31
VPS13A-211ENST00000484581 PCDH1Q08174 1060 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 C2CD4AQ8NCU7 369 aaPredicted RBP6.85□□□□□ -1.31
VPS13A-211ENST00000484581 DDX54Q8TDD1 881 aaKnown RBP6.85□□□□□ -1.31
VPS13A-211ENST00000484581 ARMC5Q96C12 935 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 TBC1D32Q96NH3 1257 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 ACBD3Q9H3P7 528 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 RAD18Q9NS91 495 aa6.85□□□□□ -1.31
VPS13A-211ENST00000484581 GIPC1O14908 333 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 CYP26A1O43174 497 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 MAOBP27338 520 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 DUSP27Q5VZP5 1158 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 GMLQ99445 158 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 CLEC4MQ9H2X3 399 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-211ENST00000484581 C12orf49Q9H741 205 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 LIN7BQ9HAP6 207 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 PRKAG2Q9UGJ0 569 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 ADGRE2Q9UHX3 823 aa6.84□□□□□ -1.31
VPS13A-211ENST00000484581 PTPN12Q05209 780 aaKnown RBP6.83□□□□□ -1.32
VPS13A-211ENST00000484581 MAP7Q14244 749 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms