RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 USP16Q9Y5T5 823 aa6.18□□□□□ -1.42
SYNE1-220ENST00000471834 PDIA3P30101 505 aaKnown RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 SMYD5Q6GMV2 418 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 CD302Q8IX05 232 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 SEC14L1Q92503 715 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 C5orf60A6NFR6 353 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 LCA5LO95447 670 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 NR1I3Q14994 352 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 GOLGA6L1Q8N7Z2 621 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 CFAP61Q8NHU2 1237 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 SMARCE1Q969G3 411 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 COL18A1P39060 1754 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 PAPPAQ13219 1627 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 ANKRD33BA6NCL7 494 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 AMOTQ4VCS5 1084 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 BBXQ8WY36 941 aaPredicted RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 XPO4Q9C0E2 1151 aaKnown RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 KCNMB3Q9NPA1 279 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 ADD3Q9UEY8 706 aaKnown RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 TBC1D2BQ9UPU7 963 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 RTL9Q8NET4 1388 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 SRGAP3O43295 1099 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 EIF2S2P20042 333 aaKnown RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 POLD1P28340 1107 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 MYL5Q02045 173 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 GCKRQ14397 625 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 DPCR1Q3MIW9 517 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 ATG9AQ7Z3C6 839 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 IQCKQ8N0W5 287 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 LIMA1Q9UHB6 759 aaKnown RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 FUT2Q10981 343 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 LONRF2Q1L5Z9 754 aa6.17□□□□□ -1.42
SYNE1-220ENST00000471834 PRPF40BQ6NWY9 871 aaKnown RBP6.17□□□□□ -1.42
SYNE1-220ENST00000471834 SCRN1Q12765 414 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 NMIQ13287 307 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 WLSQ5T9L3 541 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 CNNM4Q6P4Q7 775 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 SRGAP1Q7Z6B7 1085 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 ZNF589Q86UQ0 364 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 PROSER2Q86WR7 435 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 CCDC83Q8IWF9 413 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 C16orf45Q96MC5 204 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 PHAXQ9H814 394 aaKnown RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 PAEPP09466 180 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 CASTP20810 708 aaKnown RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 METTL16Q86W50 562 aaKnown RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 TCEAL9Q9UHQ7 104 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 SURF6O75683 361 aaKnown RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 SFPQP23246 707 aaKnown RBP eCLIP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 MLKLQ8NB16 471 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 JAKMIP1Q96N16 626 aaKnown RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 TJP1Q07157 1748 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 FSBPO95073 299 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 FBLN1P23142 703 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 TSPYL4Q9UJ04 414 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 ZNF142P52746 1687 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 AGPSO00116 658 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 RTN2O75298 545 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 IFNAR1P17181 557 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 LTKP29376 864 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 NGLY1Q96IV0 654 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 NENFQ9UMX5 172 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 A0A1W2PQC6 194 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 TNNT3P45378 269 aaPredicted RBP6.16□□□□□ -1.42
SYNE1-220ENST00000471834 PPP2R5BQ15173 497 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 WHAMMP3Q1A5X7 153 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 FAM173BQ6P4H8 233 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 AMOTL1Q8IY63 956 aa6.16□□□□□ -1.42
SYNE1-220ENST00000471834 ADAMTSL3P82987 1691 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 A0A087WUV0 522 aaPredicted RBP6.15□□□□□ -1.42
SYNE1-220ENST00000471834 IVLP07476 585 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 MYBP10242 640 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 HDGFL1Q5TGJ6 251 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 RESP18Q5W5W9 173 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 NEK1Q96PY6 1258 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 DNAJC7Q99615 494 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 EDEM3Q9BZQ6 932 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 CLEC11AQ9Y240 323 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 UBR2Q8IWV8 1755 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 ZSCAN12O43309 604 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 MMGT1Q8N4V1 131 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 MAB21L3Q8N8X9 362 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 GRM8O00222 908 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 MARCH6O60337 910 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 RRS1Q15050 365 aaKnown RBP6.15□□□□□ -1.42
SYNE1-220ENST00000471834 C1orf141Q5JVX7 400 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 WDR24Q96S15 920 aa6.15□□□□□ -1.42
SYNE1-220ENST00000471834 C11orf91Q3C1V1 193 aa6.15□□□□□ -1.43
SYNE1-220ENST00000471834 PI4KAP2A4QPH2 592 aa6.15□□□□□ -1.43
SYNE1-220ENST00000471834 CSF1RP07333 972 aa6.15□□□□□ -1.43
SYNE1-220ENST00000471834 IRF2BP1Q8IU81 584 aa6.15□□□□□ -1.43
SYNE1-220ENST00000471834 PI4KAP1Q8N8J0 262 aa6.15□□□□□ -1.43
SYNE1-220ENST00000471834 FAM71BQ8TC56 605 aa6.15□□□□□ -1.43
SYNE1-220ENST00000471834 REXO2Q9Y3B8 237 aaKnown RBP6.15□□□□□ -1.43
SYNE1-220ENST00000471834 PLCB4Q15147 1175 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 SF3A1Q15459 793 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 TLDC1Q6P9B6 456 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 AENQ8WTP8 325 aaKnown RBP6.14□□□□□ -1.43
SYNE1-220ENST00000471834 TRIM5Q9C035 493 aa6.14□□□□□ -1.43
SYNE1-220ENST00000471834 PPP2R2CQ9Y2T4 447 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms