RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 TMEM39AQ9NV64 488 aa8.53□□□□□ -1.04
CKS1B-204ENST00000471245 GPN3Q9UHW5 284 aaPredicted RBP8.53□□□□□ -1.04
CKS1B-204ENST00000471245 SUPT16HQ9Y5B9 1047 aaKnown RBP8.53□□□□□ -1.04
CKS1B-204ENST00000471245 MINDY4BA8MYZ0 360 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 M0R082 166 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 ALBP02768 609 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 GARTP22102 1010 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 PODNQ7Z5L7 613 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 ZNF417Q8TAU3 575 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 ZNF296Q8WUU4 475 aaPredicted RBP8.52□□□□□ -1.05
CKS1B-204ENST00000471245 DHX38Q92620 1227 aaKnown RBP8.52□□□□□ -1.05
CKS1B-204ENST00000471245 ZNF587Q96SQ5 575 aaPredicted RBP8.52□□□□□ -1.05
CKS1B-204ENST00000471245 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.52□□□□□ -1.05
CKS1B-204ENST00000471245 SAMM50Q9Y512 469 aa8.52□□□□□ -1.05
CKS1B-204ENST00000471245 F6X3S4 739 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 GNB5O14775 395 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 GREM1O60565 184 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 GTF2F1P35269 517 aaKnown RBP eCLIP8.51□□□□□ -1.05
CKS1B-204ENST00000471245 SNRPNP63162 240 aaKnown RBP8.51□□□□□ -1.05
CKS1B-204ENST00000471245 PCDH1Q08174 1060 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 CAMK2GQ13555 558 aaPredicted RBP8.51□□□□□ -1.05
CKS1B-204ENST00000471245 COL9A3Q14050 684 aaPredicted RBP8.51□□□□□ -1.05
CKS1B-204ENST00000471245 COL9A2Q14055 689 aaPredicted RBP8.51□□□□□ -1.05
CKS1B-204ENST00000471245 PCNX4Q63HM2 1172 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 VN1R5Q7Z5H4 357 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 SMG9Q9H0W8 520 aaKnown RBP8.51□□□□□ -1.05
CKS1B-204ENST00000471245 RRAGCQ9HB90 399 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 TLR6Q9Y2C9 796 aa8.51□□□□□ -1.05
CKS1B-204ENST00000471245 PAGE1O75459 146 aa8.5□□□□□ -1.05
CKS1B-204ENST00000471245 PF4P02776 101 aa8.5□□□□□ -1.05
CKS1B-204ENST00000471245 AFF1P51825 1210 aaKnown RBP8.5□□□□□ -1.05
CKS1B-204ENST00000471245 RBL2Q08999 1139 aa8.5□□□□□ -1.05
CKS1B-204ENST00000471245 SNAP47Q5SQN1 464 aa8.5□□□□□ -1.05
CKS1B-204ENST00000471245 FBXL19Q6PCT2 694 aa8.5□□□□□ -1.05
CKS1B-204ENST00000471245 CCDC84Q86UT8 332 aaPredicted RBP8.5□□□□□ -1.05
CKS1B-204ENST00000471245 ALYREFQ86V81 257 aaKnown RBP8.5□□□□□ -1.05
CKS1B-204ENST00000471245 EAF1Q96JC9 268 aaPredicted RBP8.5□□□□□ -1.05
CKS1B-204ENST00000471245 HIRIP3Q9BW71 556 aaPredicted RBP8.5□□□□□ -1.05
CKS1B-204ENST00000471245 STRIP2Q9ULQ0 834 aa8.5□□□□□ -1.05
CKS1B-204ENST00000471245 FAM177BA6PVY3 158 aa8.49□□□□□ -1.05
CKS1B-204ENST00000471245 RNF225M0QZC1 329 aaPredicted RBP8.49□□□□□ -1.05
CKS1B-204ENST00000471245 TFE3P19532 575 aaPredicted RBP8.49□□□□□ -1.05
CKS1B-204ENST00000471245 GRIK5Q16478 980 aa8.49□□□□□ -1.05
CKS1B-204ENST00000471245 SOGA3Q5TF21 947 aa8.49□□□□□ -1.05
CKS1B-204ENST00000471245 TRIM42Q8IWZ5 723 aa8.49□□□□□ -1.05
CKS1B-204ENST00000471245 DNAJC2Q99543 621 aaKnown RBP8.49□□□□□ -1.05
CKS1B-204ENST00000471245 TRIM33Q9UPN9 1127 aa8.49□□□□□ -1.05
CKS1B-204ENST00000471245 CUL7Q14999 1698 aa8.49□□□□□ -1.05
CKS1B-204ENST00000471245 SPDYE3A6NKU9 549 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 NID1P14543 1247 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 NME2P22392 152 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 SOX9P48436 509 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 FAM160A1Q05DH4 1040 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 ZNF423Q2M1K9 1284 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 SCARA3Q6AZY7 606 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 ADAMTSL4Q6UY14 1074 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 FAM196AQ6ZSG2 479 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 DPH6Q7L8W6 267 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 GOLM1Q8NBJ4 401 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 LRRC3Q9BY71 257 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 JPH1Q9HDC5 661 aaPredicted RBP8.48□□□□□ -1.05
CKS1B-204ENST00000471245 NOP53Q9NZM5 478 aaKnown RBP8.48□□□□□ -1.05
CKS1B-204ENST00000471245 CYP8B1Q9UNU6 501 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 CNTNAP5Q8WYK1 1306 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 ROBO2Q9HCK4 1378 aa8.48□□□□□ -1.05
CKS1B-204ENST00000471245 STK10O94804 968 aaKnown RBP8.47□□□□□ -1.05
CKS1B-204ENST00000471245 ESRRAP11474 423 aaPredicted RBP8.47□□□□□ -1.05
CKS1B-204ENST00000471245 KCNMA1Q12791 1236 aa8.47□□□□□ -1.05
CKS1B-204ENST00000471245 DDX54Q8TDD1 881 aaKnown RBP8.47□□□□□ -1.05
CKS1B-204ENST00000471245 NUDT8Q8WV74 236 aa8.47□□□□□ -1.05
CKS1B-204ENST00000471245 SOX17Q9H6I2 414 aaPredicted RBP8.47□□□□□ -1.05
CKS1B-204ENST00000471245 GLI2P10070 1586 aa8.47□□□□□ -1.05
CKS1B-204ENST00000471245 EIF4EBP3O60516 100 aaPredicted RBP8.46□□□□□ -1.06
CKS1B-204ENST00000471245 LMNB1P20700 586 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 BMP6P22004 513 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 CDC27P30260 824 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 NASPP49321 788 aaPredicted RBP8.46□□□□□ -1.06
CKS1B-204ENST00000471245 CABP4P57796 275 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 APOBRQ0VD83 1088 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 IKBKEQ14164 716 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 LRRC14Q15048 493 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 SULF2Q8IWU5 870 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 EMILIN2Q9BXX0 1053 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 LNPKQ9C0E8 428 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 LACRTQ9GZZ8 138 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 MIR1-1HGQ9H1L0 117 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 MAP3K4Q9Y6R4 1608 aa8.46□□□□□ -1.06
CKS1B-204ENST00000471245 H3BRJ5 948 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 ZNF157P51786 506 aaPredicted RBP8.45□□□□□ -1.06
CKS1B-204ENST00000471245 DIEXFQ68CQ4 756 aaKnown RBP8.45□□□□□ -1.06
CKS1B-204ENST00000471245 MSL1Q68DK7 614 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 SLITRK4Q8IW52 837 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 DTWD1Q8N5C7 304 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 TRIM11Q96F44 468 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 GINM1Q9NU53 330 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 UBP1Q9NZI7 540 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 EFR3BQ9Y2G0 817 aa8.45□□□□□ -1.06
CKS1B-204ENST00000471245 COL17A1Q9UMD9 1497 aaPredicted RBP8.45□□□□□ -1.06
CKS1B-204ENST00000471245 KIAA0586Q9BVV6 1533 aa8.44□□□□□ -1.06
CKS1B-204ENST00000471245 SSBP05455 408 aaKnown RBP eCLIP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms