RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 HSP90AB1P08238 724 aaKnown RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 GRNP28799 593 aaKnown RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 HIRAP54198 1017 aaPredicted RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 FKBP5Q13451 457 aaPredicted RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 LBRQ14739 615 aaKnown RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 OCLNQ16625 522 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 FAM26DQ5JW98 314 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 ERICH6BQ5W0A0 696 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 RAPGEF4Q8WZA2 1011 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 RTF1Q92541 710 aaKnown RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 SUSD3Q96L08 255 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 NLRP2Q9NX02 1062 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 LRFN2Q9ULH4 789 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 ATXN7L1Q9ULK2 861 aaPredicted RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 SPG7Q9UQ90 795 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 RRP7AQ9Y3A4 280 aaKnown RBP7.09□□□□□ -1.27
VPS41-211ENST00000466017 RGPD5Q99666 1765 aa7.09□□□□□ -1.27
VPS41-211ENST00000466017 CEMIPQ8WUJ3 1361 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 SOS1Q07889 1333 aaPredicted RBP7.08□□□□□ -1.28
VPS41-211ENST00000466017 SLIT2O94813 1529 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 ZBTB7CA1YPR0 619 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 ATG7O95352 703 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 IGFBP4P22692 258 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 TOM1L2Q6ZVM7 507 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 IFNL2Q8IZJ0 200 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 IL17REQ8NFR9 667 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 RHPN1Q8TCX5 695 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 QTRT2Q9H974 415 aaKnown RBP7.08□□□□□ -1.28
VPS41-211ENST00000466017 BTG4Q9NY30 223 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 KLK14Q9P0G3 267 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 SERPINA10Q9UK55 444 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 RBM19Q9Y4C8 960 aaKnown RBP7.08□□□□□ -1.28
VPS41-211ENST00000466017 OVOS2A0A0G2JMS6 1433 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 CRB1P82279 1406 aa7.08□□□□□ -1.28
VPS41-211ENST00000466017 IL2RBP14784 551 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 HOXB4P17483 251 aaPredicted RBP7.07□□□□□ -1.28
VPS41-211ENST00000466017 HSPA1LP34931 641 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 ELOAQ14241 798 aaKnown RBP7.07□□□□□ -1.28
VPS41-211ENST00000466017 TAF7Q15545 349 aaPredicted RBP7.07□□□□□ -1.28
VPS41-211ENST00000466017 STAG2Q8N3U4 1231 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 USHBP1Q8N6Y0 703 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 CCDC97Q96F63 343 aaPredicted RBP7.07□□□□□ -1.28
VPS41-211ENST00000466017 SLC30A3Q99726 388 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 SAP130Q9H0E3 1048 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 DMGDHQ9UI17 866 aaKnown RBP7.07□□□□□ -1.28
VPS41-211ENST00000466017 RCAN3Q9UKA8 241 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 RGPD2P0DJD1 1756 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 DLG5Q8TDM6 1919 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 MAP3K5Q99683 1374 aa7.07□□□□□ -1.28
VPS41-211ENST00000466017 RNMTO43148 476 aaKnown RBP7.06□□□□□ -1.28
VPS41-211ENST00000466017 BMP4P12644 408 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 PHKG2P15735 406 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 VPS72Q15906 364 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 C1orf141Q5JVX7 400 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 C1orf53Q5VUE5 145 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 RAB44Q7Z6P3 723 aaPredicted RBP7.06□□□□□ -1.28
VPS41-211ENST00000466017 UNC5CLQ8IV45 518 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 ZCRB1Q8TBF4 217 aaKnown RBP7.06□□□□□ -1.28
VPS41-211ENST00000466017 PBXIP1Q96AQ6 731 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 CHMP4AQ9BY43 222 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 OXCT2Q9BYC2 517 aaPredicted RBP7.06□□□□□ -1.28
VPS41-211ENST00000466017 GGA1Q9UJY5 639 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 NWD2Q9ULI1 1742 aa7.06□□□□□ -1.28
VPS41-211ENST00000466017 SPATA31A1Q5TZJ5 1347 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 SPATA31A5Q5VU36 1347 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 SPATA31A7Q8IWB4 1347 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 CNTNAP5Q8WYK1 1306 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 DISP2A7MBM2 1401 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 VAMP4O75379 141 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 FAM157BP0CG42 384 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 BCRP11274 1271 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 PCBP4P57723 403 aaKnown RBP7.05□□□□□ -1.28
VPS41-211ENST00000466017 SNRPNP63162 240 aaKnown RBP7.05□□□□□ -1.28
VPS41-211ENST00000466017 ALDH1L2Q3SY69 923 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 ZNF530Q6P9A1 599 aaPredicted RBP7.05□□□□□ -1.28
VPS41-211ENST00000466017 DCAF5Q96JK2 942 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 USP20Q9Y2K6 914 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 SUPT16HQ9Y5B9 1047 aaKnown RBP7.05□□□□□ -1.28
VPS41-211ENST00000466017 ADAMTS7Q9UKP4 1686 aa7.05□□□□□ -1.28
VPS41-211ENST00000466017 FANCIQ9NVI1 1328 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 NEURL1BA8MQ27 555 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 ERVV-2B6SEH9 535 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 EXOC5O00471 708 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 CYP27B1O15528 508 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 OIP5O43482 229 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 HOXB7P09629 217 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 RARSP54136 660 aaKnown RBP7.04□□□□□ -1.28
VPS41-211ENST00000466017 DCTN1Q14203 1278 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 COX20Q5RI15 118 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 SAMD5Q5TGI4 173 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 FIGNL1Q6PIW4 674 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 MCM10Q7L590 875 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 FCHSD1Q86WN1 690 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.04□□□□□ -1.28
VPS41-211ENST00000466017 GALNT6Q8NCL4 622 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 MKNK1Q9BUB5 465 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 GJA3Q9Y6H8 435 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 DNMT3AQ9Y6K1 912 aaPredicted RBP7.04□□□□□ -1.28
VPS41-211ENST00000466017 BCL9LQ86UU0 1499 aa7.04□□□□□ -1.28
VPS41-211ENST00000466017 PCDH11XQ9BZA7 1347 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms