RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 MVPQ14764 893 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-204ENST00000453046 IFNL1Q8IU54 200 aa22.2■■□□□ 1.14
SQSTM1-204ENST00000453046 ZGPATQ8N5A5 531 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-204ENST00000453046 OPTNQ96CV9 577 aa22.2■■□□□ 1.14
SQSTM1-204ENST00000453046 CSADQ9Y600 493 aa22.2■■□□□ 1.14
SQSTM1-204ENST00000453046 OTUD7BQ6GQQ9 843 aa22.19■■□□□ 1.14
SQSTM1-204ENST00000453046 EXOC6Q8TAG9 804 aa22.19■■□□□ 1.14
SQSTM1-204ENST00000453046 XAGE2Q96GT9 111 aa22.19■■□□□ 1.14
SQSTM1-204ENST00000453046 DAGLAQ9Y4D2 1042 aa22.19■■□□□ 1.14
SQSTM1-204ENST00000453046 SALL1Q9NSC2 1324 aa22.19■■□□□ 1.14
SQSTM1-204ENST00000453046 PNMA6EA0A0J9YXQ4 647 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 GJA5P36382 358 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 AAMPQ13685 434 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 RASGRF1Q13972 1273 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 GORABQ5T7V8 394 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 CFHR5Q9BXR6 569 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 ABCF2Q9UG63 623 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 COG6Q9Y2V7 657 aa22.18■■□□□ 1.14
SQSTM1-204ENST00000453046 FKTNO75072 461 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 VGLL4Q14135 290 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 NOM1Q5C9Z4 860 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 DCAF15Q66K64 600 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 CDC42EP5Q6NZY7 148 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 ITPRIPQ8IWB1 547 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 USP40Q9NVE5 1235 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 DDX19BQ9UMR2 479 aa22.17■■□□□ 1.14
SQSTM1-204ENST00000453046 IGF2BP3O00425 579 aaKnown RBP eCLIP22.16■■□□□ 1.14
SQSTM1-204ENST00000453046 SPTY2D1Q68D10 685 aaPredicted RBP22.16■■□□□ 1.14
SQSTM1-204ENST00000453046 DZIP1Q86YF9 867 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-204ENST00000453046 FAM151AQ8WW52 585 aa22.16■■□□□ 1.14
SQSTM1-204ENST00000453046 WRNIP1Q96S55 665 aa22.16■■□□□ 1.14
SQSTM1-204ENST00000453046 R3HDMLQ9H3Y0 253 aa22.16■■□□□ 1.14
SQSTM1-204ENST00000453046 ZBTB22O15209 634 aa22.15■■□□□ 1.14
SQSTM1-204ENST00000453046 TCP10Q12799 353 aa22.15■■□□□ 1.14
SQSTM1-204ENST00000453046 OS9Q13438 667 aaPredicted RBP22.15■■□□□ 1.14
SQSTM1-204ENST00000453046 PKN2Q16513 984 aaKnown RBP22.15■■□□□ 1.14
SQSTM1-204ENST00000453046 SLF2Q8IX21 1173 aa22.15■■□□□ 1.14
SQSTM1-204ENST00000453046 PPP4R2Q9NY27 417 aa22.15■■□□□ 1.14
SQSTM1-204ENST00000453046 RPAP1Q9BWH6 1393 aaPredicted RBP22.14■■□□□ 1.14
SQSTM1-204ENST00000453046 PDS5AQ29RF7 1337 aaKnown RBP22.14■■□□□ 1.14
SQSTM1-204ENST00000453046 MIGA2Q7L4E1 593 aa22.14■■□□□ 1.13
SQSTM1-204ENST00000453046 CNKSR2Q8WXI2 1034 aa22.14■■□□□ 1.13
SQSTM1-204ENST00000453046 OTUD5Q96G74 571 aa22.14■■□□□ 1.13
SQSTM1-204ENST00000453046 CHMP4BQ9H444 224 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-204ENST00000453046 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.14■■□□□ 1.13
SQSTM1-204ENST00000453046 GTF2A2P52657 109 aa22.13■■□□□ 1.13
SQSTM1-204ENST00000453046 NFIAQ12857 509 aa22.13■■□□□ 1.13
SQSTM1-204ENST00000453046 ZNF341Q9BYN7 854 aa22.13■■□□□ 1.13
SQSTM1-204ENST00000453046 C1orf115Q9H7X2 142 aa22.13■■□□□ 1.13
SQSTM1-204ENST00000453046 TESPA1A2RU30 521 aaPredicted RBP22.12■■□□□ 1.13
SQSTM1-204ENST00000453046 ATP8B2P98198 1209 aa22.12■■□□□ 1.13
SQSTM1-204ENST00000453046 ERICH6Q7L0X2 663 aa22.12■■□□□ 1.13
SQSTM1-204ENST00000453046 ZKSCAN4Q969J2 545 aaPredicted RBP22.12■■□□□ 1.13
SQSTM1-204ENST00000453046 OTOFQ9HC10 1997 aa22.12■■□□□ 1.13
SQSTM1-204ENST00000453046 CCL15-CCL14A0A0B4J2E2 113 aa22.11■■□□□ 1.13
SQSTM1-204ENST00000453046 POLA2Q14181 598 aa22.11■■□□□ 1.13
SQSTM1-204ENST00000453046 CCL15Q16663 113 aa22.11■■□□□ 1.13
SQSTM1-204ENST00000453046 ERO1BQ86YB8 467 aa22.11■■□□□ 1.13
SQSTM1-204ENST00000453046 MS4A4AQ96JQ5 239 aa22.11■■□□□ 1.13
SQSTM1-204ENST00000453046 PTPN18Q99952 460 aa22.11■■□□□ 1.13
SQSTM1-204ENST00000453046 SPDYE5A6NIY4 337 aa22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 ZBTB7BO15156 539 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 SURF6O75683 361 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 MLLT1Q03111 559 aaPredicted RBP22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 SPATA5Q8NB90 893 aa22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 SSH3Q8TE77 659 aa22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 HMG20BQ9P0W2 317 aa22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 FAM198AQ9UFP1 575 aa22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 SNCAIPQ9Y6H5 919 aa22.1■■□□□ 1.13
SQSTM1-204ENST00000453046 CRHR2Q13324 411 aa22.09■■□□□ 1.13
SQSTM1-204ENST00000453046 BRI3BPQ8WY22 251 aa22.09■■□□□ 1.13
SQSTM1-204ENST00000453046 HPS5Q9UPZ3 1129 aa22.09■■□□□ 1.13
SQSTM1-204ENST00000453046 GAKO14976 1311 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 UQCRFS1P1P0C7P4 283 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 ARID4AP29374 1257 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 BTDP43251 543 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 RGS19P49795 217 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 RGS3P49796 1198 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 MECOMQ03112 1051 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 PI16Q6UXB8 463 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 ZSCAN29Q8IWY8 852 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 FAM163AQ96GL9 167 aaPredicted RBP22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 RAI14Q9P0K7 980 aa22.08■■□□□ 1.13
SQSTM1-204ENST00000453046 AK9Q5TCS8 1911 aa22.08■■□□□ 1.12
SQSTM1-204ENST00000453046 MROH7-TTC4A0A0A0MT08 1334 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 WDHD1O75717 1129 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 CETPP11597 493 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 INPP5BP32019 993 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 TAF1CQ15572 869 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 TNNI3KQ59H18 835 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 CCDC158Q5M9N0 1113 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 TTC39AQ5SRH9 613 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 FBXO46Q6PJ61 603 aaPredicted RBP22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 IDI2Q9BXS1 227 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 GPR108Q9NPR9 543 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 FPGT-TNNI3KV9GXZ4 949 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 MYH2Q9UKX2 1941 aa22.07■■□□□ 1.12
SQSTM1-204ENST00000453046 IRF6O14896 467 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 127.6 ms