RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 SERPINA10Q9UK55 444 aa14.92□□□□□ -0.02
USP40-208ENST00000450966 NBPF7P0C2Y1 421 aaPredicted RBP14.91□□□□□ -0.02
USP40-208ENST00000450966 E2F5Q15329 346 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 CAPZA3Q96KX2 299 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 RNF8O76064 485 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 STMN1P16949 149 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 RWDD2BP57060 319 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 IRX4P78413 519 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 MCM10Q7L590 875 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 SIRT1Q96EB6 747 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 IL1RAPL2Q9NP60 686 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 CABP5Q9NP86 173 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 LMBRD1Q9NUN5 540 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 U3KPZ7 1027 aaPredicted RBP14.91□□□□□ -0.02
USP40-208ENST00000450966 CHRNA2Q15822 529 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 NLRP3Q96P20 1036 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 DONSONQ9NYP3 566 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 MORC2Q9Y6X9 1032 aaPredicted RBP14.91□□□□□ -0.02
USP40-208ENST00000450966 AKR1B10O60218 316 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 TEX11Q8IYF3 940 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 IFT81Q8WYA0 676 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 MCUR1Q96AQ8 359 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 C8orf76Q96K31 380 aa14.91□□□□□ -0.02
USP40-208ENST00000450966 CCDC85AQ96PX6 553 aaPredicted RBP14.91□□□□□ -0.02
USP40-208ENST00000450966 GKAP1Q5VSY0 366 aaPredicted RBP14.91□□□□□ -0.02
USP40-208ENST00000450966 MRPS27Q92552 414 aaKnown RBP14.91□□□□□ -0.02
USP40-208ENST00000450966 RUFY3Q7L099 469 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 IFT20Q8IY31 132 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 PYM1Q9BRP8 204 aaKnown RBP14.9□□□□□ -0.02
USP40-208ENST00000450966 NKIRAS1Q9NYS0 192 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 ARHGAP6O43182 974 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 BAG6P46379 1132 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 ARHGEF2Q92974 986 aaKnown RBP14.9□□□□□ -0.02
USP40-208ENST00000450966 DCAF5Q96JK2 942 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 MKNK2Q9HBH9 465 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 PIK3C2GO75747 1445 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 RABGGTAQ92696 567 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 TSGA10Q9BZW7 698 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 NPATQ14207 1427 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 ABCC1P33527 1531 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 DISP1Q96F81 1524 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 PPP4R3AQ6IN85 833 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 CNGA4Q8IV77 575 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 CUL5Q93034 780 aa14.9□□□□□ -0.02
USP40-208ENST00000450966 SESN3P58005 492 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 SLFNL1Q499Z3 407 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 TPTE2Q6XPS3 522 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 CCDC63Q8NA47 563 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 FAM210AQ96ND0 272 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 TSG101Q99816 390 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 FAM204AQ9H8W3 233 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 PDE11AQ9HCR9 933 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 ZFXP17010 805 aaPredicted RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 PRPF40BQ6NWY9 871 aaKnown RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 CHCHD3Q9NX63 227 aaKnown RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 TRIM35Q9UPQ4 493 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 BATF3Q9NR55 127 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 TMED1Q13445 227 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 ZNF444Q8N0Y2 327 aaPredicted RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 DDX23Q9BUQ8 820 aaKnown RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 MTRF1LQ9UGC7 380 aaKnown RBP14.89□□□□□ -0.03
USP40-208ENST00000450966 GUCA1BQ9UMX6 200 aa14.89□□□□□ -0.03
USP40-208ENST00000450966 OPHN1O60890 802 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 CLTAP09496 248 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 APBA1Q02410 837 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 KCNG4Q8TDN1 519 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 NBPF9Q3BBW0 867 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 GAS2L3Q86XJ1 694 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 FLAD1Q8NFF5 587 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP40-208ENST00000450966 TFCP2L1Q9NZI6 479 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 PPP1R9AQ9ULJ8 1098 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 GMNNO75496 209 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 TTC22Q5TAA0 569 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 FYB2Q5VWT5 728 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 PPP1R14CQ8TAE6 165 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 UBLCP1Q8WVY7 318 aaPredicted RBP14.88□□□□□ -0.03
USP40-208ENST00000450966 TMEM51Q9NW97 253 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 MTUS1Q9ULD2 1270 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 DNM1Q05193 864 aaKnown RBP14.88□□□□□ -0.03
USP40-208ENST00000450966 OGFOD1Q8N543 542 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 ZNF513Q8N8E2 541 aaPredicted RBP14.88□□□□□ -0.03
USP40-208ENST00000450966 SPDL1Q96EA4 605 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 PRDM4Q9UKN5 801 aa14.88□□□□□ -0.03
USP40-208ENST00000450966 YTHDC2Q9H6S0 1430 aaKnown RBP14.88□□□□□ -0.03
USP40-208ENST00000450966 MAST1Q9Y2H9 1570 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 LMOD1P29536 600 aaPredicted RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 PAK2Q13177 524 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 CAPRIN2Q6IMN6 1127 aaKnown RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 JDP2Q8WYK2 163 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 IQCGQ9H095 443 aaKnown RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 NOP2P46087 812 aaKnown RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 MTIF2P46199 727 aaKnown RBP14.87□□□□□ -0.03
USP40-208ENST00000450966 MTMR3Q13615 1198 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 GRIPAP1Q4V328 841 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 C8orf74Q6P047 294 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 Q9H521 79 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 ZC4H2Q9NQZ6 224 aa14.87□□□□□ -0.03
USP40-208ENST00000450966 IKBKGQ9Y6K9 419 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms