RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 SCAND2PQ9GZW5 306 aaPredicted RBP30.18■■■□□ 2.42
CPNE1-216ENST00000437340 CNNM2Q9H8M5 875 aa30.18■■■□□ 2.42
CPNE1-216ENST00000437340 NCOA5Q9HCD5 579 aaKnown RBP30.18■■■□□ 2.42
CPNE1-216ENST00000437340 GPHNQ9NQX3 736 aaPredicted RBP30.18■■■□□ 2.42
CPNE1-216ENST00000437340 ANGEL1Q9UNK9 670 aaKnown RBP30.18■■■□□ 2.42
CPNE1-216ENST00000437340 ANKRD31Q8N7Z5 1873 aa30.18■■■□□ 2.42
CPNE1-216ENST00000437340 TIAM2Q8IVF5 1701 aa30.18■■■□□ 2.42
CPNE1-216ENST00000437340 GRAPQ13588 217 aa30.18■■■□□ 2.42
CPNE1-216ENST00000437340 GRAPLQ8TC17 118 aaPredicted RBP30.18■■■□□ 2.42
CPNE1-216ENST00000437340 PANK2Q9BZ23 570 aa30.18■■■□□ 2.42
CPNE1-216ENST00000437340 HIBADHP31937 336 aaKnown RBP30.17■■■□□ 2.42
CPNE1-216ENST00000437340 RESTQ13127 1097 aa30.17■■■□□ 2.42
CPNE1-216ENST00000437340 MSL1Q68DK7 614 aa30.16■■■□□ 2.42
CPNE1-216ENST00000437340 HPS5Q9UPZ3 1129 aa30.16■■■□□ 2.42
CPNE1-216ENST00000437340 SYCE3A1L190 88 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 GOLGA8BA8MQT2 603 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 SH2B2O14492 632 aaPredicted RBP30.15■■■□□ 2.42
CPNE1-216ENST00000437340 TDO2P48775 406 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 KRT23Q9C075 422 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 MAGEB6P1A0A0J9YX57 407 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 ST5P78524 1137 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 AKNAD1Q5T1N1 836 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 CYB5R4Q7L1T6 521 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 STAG1Q8WVM7 1258 aa30.15■■■□□ 2.42
CPNE1-216ENST00000437340 PRKAB2O43741 272 aa30.14■■■□□ 2.42
CPNE1-216ENST00000437340 IGSF3O75054 1194 aa30.14■■■□□ 2.42
CPNE1-216ENST00000437340 CCDC183Q5T5S1 534 aa30.14■■■□□ 2.42
CPNE1-216ENST00000437340 MIGA1Q8NAN2 632 aa30.14■■■□□ 2.42
CPNE1-216ENST00000437340 NEDD4P46934 1319 aa30.14■■■□□ 2.41
CPNE1-216ENST00000437340 LETM1O95202 739 aaPredicted RBP30.13■■■□□ 2.41
CPNE1-216ENST00000437340 RGS22Q8NE09 1264 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 LEMD3Q9Y2U8 911 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 CACNA1SQ13698 1873 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 IRS2Q9Y4H2 1338 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 B4E1Z4 1266 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 KLRK1P26718 216 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 ADGRA1Q86SQ6 560 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 TTC6Q86TZ1 520 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 MTA3Q9BTC8 594 aa30.13■■■□□ 2.41
CPNE1-216ENST00000437340 MMP10P09238 476 aa30.12■■■□□ 2.41
CPNE1-216ENST00000437340 NASPP49321 788 aaPredicted RBP30.12■■■□□ 2.41
CPNE1-216ENST00000437340 MFSD6Q6ZSS7 791 aa30.12■■■□□ 2.41
CPNE1-216ENST00000437340 RIOK1Q9BRS2 568 aaKnown RBP30.12■■■□□ 2.41
CPNE1-216ENST00000437340 LIFRP42702 1097 aa30.11■■■□□ 2.41
CPNE1-216ENST00000437340 SGMS1Q86VZ5 419 aa30.11■■■□□ 2.41
CPNE1-216ENST00000437340 IGDCC4Q8TDY8 1250 aa30.11■■■□□ 2.41
CPNE1-216ENST00000437340 RNF41Q9H4P4 317 aaPredicted RBP30.11■■■□□ 2.41
CPNE1-216ENST00000437340 CRY2Q49AN0 593 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 FAM173BQ6P4H8 233 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 ANAPC4Q9UJX5 808 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 CPLX1O14810 134 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 FDPSP14324 419 aaKnown RBP30.1■■■□□ 2.41
CPNE1-216ENST00000437340 CTDSPL2Q05D32 466 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 ATL3Q6DD88 541 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 CFAP45Q9UL16 551 aa30.1■■■□□ 2.41
CPNE1-216ENST00000437340 NSUN4Q96CB9 384 aaKnown RBP30.09■■■□□ 2.41
CPNE1-216ENST00000437340 SPATA32Q96LK8 384 aa30.09■■■□□ 2.41
CPNE1-216ENST00000437340 PDGFDQ9GZP0 370 aaPredicted RBP30.09■■■□□ 2.41
CPNE1-216ENST00000437340 GIMAP6Q6P9H5 292 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 NKX2-3Q8TAU0 364 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 RPGRQ92834 1020 aaKnown RBP30.08■■■□□ 2.41
CPNE1-216ENST00000437340 XDHP47989 1333 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 CHD4Q14839 1912 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 APOA5Q6Q788 366 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 C15orf52Q6ZUT6 534 aaKnown RBP30.08■■■□□ 2.41
CPNE1-216ENST00000437340 LEO1Q8WVC0 666 aaPredicted RBP30.08■■■□□ 2.41
CPNE1-216ENST00000437340 BRIP1Q9BX63 1249 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 LY9Q9HBG7 655 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 ZSWIM5Q9P217 1185 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 PARP3Q9Y6F1 533 aa30.08■■■□□ 2.41
CPNE1-216ENST00000437340 KDM4AO75164 1064 aa30.07■■■□□ 2.4
CPNE1-216ENST00000437340 TMEM67Q5HYA8 995 aa30.07■■■□□ 2.4
CPNE1-216ENST00000437340 RBSNQ9H1K0 784 aa30.07■■■□□ 2.4
CPNE1-216ENST00000437340 ANKIB1Q9P2G1 1089 aa30.07■■■□□ 2.4
CPNE1-216ENST00000437340 CDKL5O76039 1030 aa30.06■■■□□ 2.4
CPNE1-216ENST00000437340 METAP2P50579 478 aaKnown RBP eCLIP30.06■■■□□ 2.4
CPNE1-216ENST00000437340 PPARAQ07869 468 aa30.06■■■□□ 2.4
CPNE1-216ENST00000437340 ZNF384Q8TF68 577 aa30.06■■■□□ 2.4
CPNE1-216ENST00000437340 TACC3Q9Y6A5 838 aa30.06■■■□□ 2.4
CPNE1-216ENST00000437340 MYH13Q9UKX3 1938 aa30.06■■■□□ 2.4
CPNE1-216ENST00000437340 COL11A2P13942 1736 aaPredicted RBP30.06■■■□□ 2.4
CPNE1-216ENST00000437340 SPTY2D1Q68D10 685 aaPredicted RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 CPLX2Q6PUV4 134 aaKnown RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 ANP32BQ92688 251 aaKnown RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 ORC3Q9UBD5 711 aaPredicted RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 SART3Q15020 963 aaKnown RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 RBM17Q96I25 401 aaKnown RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 TSPY26PQ9H489 355 aa30.05■■■□□ 2.4
CPNE1-216ENST00000437340 TFIP11Q9UBB9 837 aaKnown RBP30.05■■■□□ 2.4
CPNE1-216ENST00000437340 IFIT3O14879 490 aaKnown RBP30.04■■■□□ 2.4
CPNE1-216ENST00000437340 MECOMQ03112 1051 aa30.04■■■□□ 2.4
CPNE1-216ENST00000437340 TXNRD3Q86VQ6 643 aa30.04■■■□□ 2.4
CPNE1-216ENST00000437340 SDR42E1Q8WUS8 393 aa30.04■■■□□ 2.4
CPNE1-216ENST00000437340 ZBTB43O43298 467 aa30.03■■■□□ 2.4
CPNE1-216ENST00000437340 INCENPQ9NQS7 918 aa30.03■■■□□ 2.4
CPNE1-216ENST00000437340 NID2Q14112 1375 aa30.03■■■□□ 2.4
CPNE1-216ENST00000437340 PCP11498 1178 aaKnown RBP30.03■■■□□ 2.4
CPNE1-216ENST00000437340 NFXL1Q6ZNB6 911 aa30.03■■■□□ 2.4
CPNE1-216ENST00000437340 TMTC2Q8N394 836 aa30.03■■■□□ 2.4
CPNE1-216ENST00000437340 C8orf76Q96K31 380 aa30.03■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms