RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 HAND2P61296 217 aa21.48■■□□□ 1.03
CCDC88C-203ENST00000389856 STOX1Q6ZVD7 989 aa21.48■■□□□ 1.03
CCDC88C-203ENST00000389856 RTFDC1Q9BY42 306 aaPredicted RBP21.48■■□□□ 1.03
CCDC88C-203ENST00000389856 PDGFDQ9GZP0 370 aaPredicted RBP21.48■■□□□ 1.03
CCDC88C-203ENST00000389856 TAF6LQ9Y6J9 622 aa21.48■■□□□ 1.03
CCDC88C-203ENST00000389856 TGFB2P61812 414 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 MFSD14BQ5SR56 506 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 PODNQ7Z5L7 613 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 FBXL16Q8N461 479 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 ATP8A2Q9NTI2 1148 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 CHD4Q14839 1912 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 TIAM2Q8IVF5 1701 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 PDIA4P13667 645 aaKnown RBP21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 PLCG2P16885 1265 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 KLHL40Q2TBA0 621 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 Q6ZUG5 572 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 ADGRA1Q86SQ6 560 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 SLC51AQ86UW1 340 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 RTKN2Q8IZC4 609 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 KRT23Q9C075 422 aa21.47■■□□□ 1.03
CCDC88C-203ENST00000389856 PCP11498 1178 aaKnown RBP21.46■■□□□ 1.03
CCDC88C-203ENST00000389856 EXOSC10Q01780 885 aaKnown RBP21.46■■□□□ 1.03
CCDC88C-203ENST00000389856 CCDC93Q567U6 631 aa21.46■■□□□ 1.03
CCDC88C-203ENST00000389856 JAG2Q9Y219 1238 aa21.46■■□□□ 1.03
CCDC88C-203ENST00000389856 C7orf43Q8WVR3 580 aa21.45■■□□□ 1.02
CCDC88C-203ENST00000389856 EPB41L4AQ9HCS5 686 aaPredicted RBP21.45■■□□□ 1.02
CCDC88C-203ENST00000389856 MROH7-TTC4A0A0A0MT08 1334 aa21.45■■□□□ 1.02
CCDC88C-203ENST00000389856 ZBTB7AO95365 584 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 SLC3A2P08195 630 aaKnown RBP21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 NT5C2P49902 561 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 MFSD6Q6ZSS7 791 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 AMOTL1Q8IY63 956 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 AATFQ9NY61 560 aaKnown RBP eCLIP21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 PRKAB2O43741 272 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 PPP4CP60510 307 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 GTF2IP78347 998 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 TOB2Q14106 344 aaPredicted RBP21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 AKNAD1Q5T1N1 836 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 ZNF384Q8TF68 577 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 AGXT2Q9BYV1 514 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 ANAPC4Q9UJX5 808 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 SMC3Q9UQE7 1217 aa21.44■■□□□ 1.02
CCDC88C-203ENST00000389856 MYH2Q9UKX2 1941 aa21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 FKBP1AP62942 108 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 DYNLL1P63167 89 aaKnown RBP21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 MB21D2Q8IYB1 491 aaPredicted RBP21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 STAG1Q8WVM7 1258 aa21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 FAM163AQ96GL9 167 aaPredicted RBP21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 VPS33BQ9H267 617 aa21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 ARPP21Q9UBL0 812 aaPredicted RBP21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 TPCN1Q9ULQ1 816 aa21.43■■□□□ 1.02
CCDC88C-203ENST00000389856 PRC1O43663 620 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 PPARAQ07869 468 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 OLFM4Q6UX06 510 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 BRF1Q92994 677 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 FBXW7Q969H0 707 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 TMEM87BQ96K49 555 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 TCEANC2Q96MN5 208 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 MTA3Q9BTC8 594 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 BRPF3Q9ULD4 1205 aa21.42■■□□□ 1.02
CCDC88C-203ENST00000389856 DPEP1P16444 411 aa21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 R3HDM1Q15032 1099 aaKnown RBP21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 ME3Q16798 604 aa21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 TBC1D10CQ8IV04 446 aa21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 SDR42E1Q8WUS8 393 aa21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 GZF1Q9H116 711 aaPredicted RBP21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 PIM2Q9P1W9 311 aa21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 ZNF219Q9P2Y4 722 aaPredicted RBP21.41■■□□□ 1.02
CCDC88C-203ENST00000389856 A0A0G2JLW4 131 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 KIAA2012Q0VF49 1180 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 SART3Q15020 963 aaKnown RBP21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 DOK7Q18PE1 504 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 CCDC83Q8IWF9 413 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 ZNF274Q96GC6 653 aaPredicted RBP21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 PSMD1Q99460 953 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 LAMB1P07942 1786 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 GPR75-ASB3A0A0A6YYF3 556 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 C21orf2O43822 256 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 BRD1O95696 1058 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 USP5P45974 858 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 STRIP1Q5VSL9 837 aa21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 ATF5Q9Y2D1 282 aaPredicted RBP21.4■■□□□ 1.02
CCDC88C-203ENST00000389856 GAKO14976 1311 aa21.39■■□□□ 1.01
CCDC88C-203ENST00000389856 MINDY4BA8MYZ0 360 aa21.39■■□□□ 1.01
CCDC88C-203ENST00000389856 SBK1Q52WX2 424 aa21.39■■□□□ 1.01
CCDC88C-203ENST00000389856 NBPF3Q9H094 633 aa21.39■■□□□ 1.01
CCDC88C-203ENST00000389856 KIF3AQ9Y496 699 aa21.39■■□□□ 1.01
CCDC88C-203ENST00000389856 DDX49Q9Y6V7 483 aaKnown RBP21.39■■□□□ 1.01
CCDC88C-203ENST00000389856 SNED1Q8TER0 1413 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 ECE2O60344 883 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 XRCC6P12956 609 aaKnown RBP eCLIP21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 PDCP20941 246 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 DIXDC1Q155Q3 683 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 ESR2Q92731 530 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 GTF3C6Q969F1 213 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 LLPHQ9BRT6 129 aaKnown RBP21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 DCP1AQ9NPI6 582 aaPredicted RBP21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 ZDHHC9Q9Y397 364 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 CD2APQ9Y5K6 639 aa21.38■■□□□ 1.01
CCDC88C-203ENST00000389856 ERICH2A1L162 156 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms