RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MB21D2Q8IYB1 491 aaPredicted RBP21.3■■□□□ 1
CCDC3-201ENST00000378825 A1BGP04217 495 aa21.3■■□□□ 1
CCDC3-201ENST00000378825 KCNJ6P48051 423 aa21.3■■□□□ 1
CCDC3-201ENST00000378825 LONRF3Q496Y0 759 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 TOM1L2Q6ZVM7 507 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 CADPS2Q86UW7 1296 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 METTL16Q86W50 562 aaKnown RBP21.29■■□□□ 1
CCDC3-201ENST00000378825 SPATA31A3Q5VYP0 1347 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 IKBKBO14920 756 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 ADKP55263 362 aaKnown RBP21.29■■□□□ 1
CCDC3-201ENST00000378825 MYL5Q02045 173 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 SLC39A14Q15043 492 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 TOGARAM2Q6ZUX3 1019 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 VSTM4Q8IW00 320 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 PDILTQ8N807 584 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 DESI2Q9BSY9 194 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 IRX2Q9BZI1 471 aaPredicted RBP21.29■■□□□ 1
CCDC3-201ENST00000378825 TUBE1Q9UJT0 475 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 PPP2R2CQ9Y2T4 447 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 TNS3Q68CZ2 1445 aa21.29■■□□□ 1
CCDC3-201ENST00000378825 TBC1D8O95759 1140 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 TOP1P11387 765 aaKnown RBP21.28■■□□□ 1
CCDC3-201ENST00000378825 TEX35Q5T0J7 233 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 VPS37DQ86XT2 251 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 ZBTB3Q9H5J0 574 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 PRDM11Q9NQV5 511 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 NRDCO43847 1150 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 ZNF827Q17R98 1081 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 BRAPQ7Z569 592 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 ZSWIM4Q9H7M6 989 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 SMARCE1Q969G3 411 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 ZNF330Q9Y3S2 320 aaPredicted RBP21.28■■□□□ 1
CCDC3-201ENST00000378825 PCDHA5Q9Y5H7 936 aa21.28■■□□□ 1
CCDC3-201ENST00000378825 A0A0U1RQJ8 604 aa21.27■■□□□ 1
CCDC3-201ENST00000378825 GNG11P61952 73 aa21.27■■□□□ 1
CCDC3-201ENST00000378825 GNL2Q13823 731 aaKnown RBP21.27■■□□□ 1
CCDC3-201ENST00000378825 IMMTQ16891 758 aaKnown RBP21.27■■□□□ 1
CCDC3-201ENST00000378825 TRMT44Q8IYL2 757 aaKnown RBP21.27■■□□□ 1
CCDC3-201ENST00000378825 ATRIPQ8WXE1 791 aa21.27■■□□□ 1
CCDC3-201ENST00000378825 MYL10Q9BUA6 226 aa21.27■■□□□ 1
CCDC3-201ENST00000378825 INCENPQ9NQS7 918 aa21.27■■□□□ 1
CCDC3-201ENST00000378825 H7C1W4 665 aa21.27■□□□□ 0.99
CCDC3-201ENST00000378825 ALG1Q9BT22 464 aa21.27■□□□□ 0.99
CCDC3-201ENST00000378825 NBPF3Q9H094 633 aa21.27■□□□□ 0.99
CCDC3-201ENST00000378825 HPSEQ9Y251 543 aa21.27■□□□□ 0.99
CCDC3-201ENST00000378825 STRCP1A6NGW2 1772 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 COL18A1P39060 1754 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 ARFGEF2Q9Y6D5 1785 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 GRIN1Q05586 938 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 KARSQ15046 597 aaKnown RBP21.26■□□□□ 0.99
CCDC3-201ENST00000378825 PTPAQ15257 358 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 LRRFIP1Q32MZ4 808 aaKnown RBP21.26■□□□□ 0.99
CCDC3-201ENST00000378825 PLBD2Q8NHP8 589 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 EYA2O00167 538 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 MTF1Q14872 753 aa21.26■□□□□ 0.99
CCDC3-201ENST00000378825 OAS2P29728 719 aaKnown RBP21.25■□□□□ 0.99
CCDC3-201ENST00000378825 IL15P40933 162 aaPredicted RBP21.25■□□□□ 0.99
CCDC3-201ENST00000378825 ZAP70P43403 619 aa21.25■□□□□ 0.99
CCDC3-201ENST00000378825 KRT40Q6A162 431 aa21.25■□□□□ 0.99
CCDC3-201ENST00000378825 CALCOCO1Q9P1Z2 691 aa21.25■□□□□ 0.99
CCDC3-201ENST00000378825 FMR1Q06787 632 aaKnown RBP eCLIP21.25■□□□□ 0.99
CCDC3-201ENST00000378825 CC2D1AQ6P1N0 951 aaPredicted RBP21.25■□□□□ 0.99
CCDC3-201ENST00000378825 CYB5R4Q7L1T6 521 aa21.25■□□□□ 0.99
CCDC3-201ENST00000378825 GRAMD1CQ8IYS0 662 aa21.25■□□□□ 0.99
CCDC3-201ENST00000378825 STRN4Q9NRL3 753 aa21.25■□□□□ 0.99
CCDC3-201ENST00000378825 ARGLU1Q9NWB6 273 aaPredicted RBP21.25■□□□□ 0.99
CCDC3-201ENST00000378825 EFCAB8A8MWE9 144 aa21.24■□□□□ 0.99
CCDC3-201ENST00000378825 RALYLQ86SE5 291 aaKnown RBP21.24■□□□□ 0.99
CCDC3-201ENST00000378825 MICU3Q86XE3 530 aa21.24■□□□□ 0.99
CCDC3-201ENST00000378825 ZCRB1Q8TBF4 217 aaKnown RBP21.24■□□□□ 0.99
CCDC3-201ENST00000378825 TFRCP02786 760 aaKnown RBP21.24■□□□□ 0.99
CCDC3-201ENST00000378825 BRINP3Q76B58 766 aa21.24■□□□□ 0.99
CCDC3-201ENST00000378825 NCOA7Q8NI08 942 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 DHX58Q96C10 678 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 MAP3K14Q99558 947 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 DHX16O60231 1041 aaKnown RBP21.23■□□□□ 0.99
CCDC3-201ENST00000378825 PRR29P0C7W0 189 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 TBC1D10CQ8IV04 446 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 FBXL16Q8N461 479 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 LMTK3Q96Q04 1460 aa21.23■□□□□ 0.99
CCDC3-201ENST00000378825 PPP2R3AQ06190 1150 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 TC2NQ8N9U0 490 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 XAGE2Q96GT9 111 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 BAG1Q99933 345 aaPredicted RBP21.22■□□□□ 0.99
CCDC3-201ENST00000378825 PARD6BQ9BYG5 372 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 GPAA1O43292 621 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 TTC39AQ5SRH9 613 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 CNNM3Q8NE01 707 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 MED15Q96RN5 788 aa21.22■□□□□ 0.99
CCDC3-201ENST00000378825 ZNF213O14771 459 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 CASQ1P31415 396 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 CCDC158Q5M9N0 1113 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 UBXN6Q9BZV1 441 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 MRPL44Q9H9J2 332 aaKnown RBP21.21■□□□□ 0.99
CCDC3-201ENST00000378825 CWC25Q9NXE8 425 aaPredicted RBP21.21■□□□□ 0.99
CCDC3-201ENST00000378825 TULP2O00295 520 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 MAP3K9P80192 1104 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 SMC1AQ14683 1233 aaKnown RBP21.21■□□□□ 0.99
CCDC3-201ENST00000378825 RESP18Q5W5W9 173 aa21.21■□□□□ 0.99
CCDC3-201ENST00000378825 KIFC2Q96AC6 838 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms