RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 ERICH4A6NGS2 130 aa16.29■□□□□ 0.2
SHROOM1-203ENST00000378679 CLEC4GQ6UXB4 293 aa16.29■□□□□ 0.2
SHROOM1-203ENST00000378679 CUL5Q93034 780 aa16.29■□□□□ 0.2
SHROOM1-203ENST00000378679 SLIT1O75093 1534 aa16.29■□□□□ 0.2
SHROOM1-203ENST00000378679 ZNF804BA4D1E1 1349 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 MAST3O60307 1309 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 RPS6KA4O75676 772 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 SERPINB2P05120 415 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 OSBP2Q969R2 916 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 V9GY48 417 aaPredicted RBP16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 ADCY5O95622 1261 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 TRIM28Q13263 835 aaKnown RBP16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 CDC37L1Q7L3B6 337 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 MNS1Q8NEH6 495 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 TSC1Q92574 1164 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 TGFBRAP1Q8WUH2 860 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 GTF3C6Q969F1 213 aa16.28■□□□□ 0.2
SHROOM1-203ENST00000378679 IDEP14735 1019 aa16.27■□□□□ 0.2
SHROOM1-203ENST00000378679 CALML3P27482 149 aa16.27■□□□□ 0.2
SHROOM1-203ENST00000378679 BMP15O95972 392 aa16.27■□□□□ 0.2
SHROOM1-203ENST00000378679 ALDH1B1P30837 517 aa16.27■□□□□ 0.2
SHROOM1-203ENST00000378679 ZNHIT6Q9NWK9 470 aaKnown RBP16.27■□□□□ 0.2
SHROOM1-203ENST00000378679 COL3A1P02461 1466 aaPredicted RBP16.27■□□□□ 0.19
SHROOM1-203ENST00000378679 KDM4FA0A1W2PPD8 638 aa16.27■□□□□ 0.19
SHROOM1-203ENST00000378679 MTERF4Q7Z6M4 381 aaKnown RBP16.27■□□□□ 0.19
SHROOM1-203ENST00000378679 FLAD1Q8NFF5 587 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 TBC1D22AQ8WUA7 517 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 CHAMP1Q96JM3 812 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 ADD1P35611 737 aaKnown RBP16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 PPARAQ07869 468 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 ANO6Q4KMQ2 910 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 CAVIN2O95810 425 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 AFMP43652 599 aa16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 EIF6P56537 245 aaKnown RBP16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 MARCH10Q8NA82 808 aaPredicted RBP16.26■□□□□ 0.19
SHROOM1-203ENST00000378679 SFPQP23246 707 aaKnown RBP eCLIP16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 PDIA6Q15084 440 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 SLFNL1Q499Z3 407 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 FAM177A1Q8N128 213 aaPredicted RBP16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 DNAJC25Q9H1X3 360 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 CLIP2Q9UDT6 1046 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 FER1L4A9Z1Z3 1794 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 BAG6P46379 1132 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 TFAP4Q01664 338 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 FAM47AQ5JRC9 791 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 PUS7LQ9H0K6 701 aaKnown RBP16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 MST1RQ04912 1400 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 MAP2P11137 1827 aaKnown RBP16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 A0A1B0GVL5 298 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 ATP2B4P23634 1241 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 KANK3Q6NY19 840 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 GAS2L3Q86XJ1 694 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 DIS3L2Q8IYB7 885 aaKnown RBP16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 PDCL2Q8N4E4 241 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 FAM200AQ8TCP9 573 aa16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 TTC12Q9H892 705 aaPredicted RBP16.25■□□□□ 0.19
SHROOM1-203ENST00000378679 hCG_1642624A0A1W2PR95 340 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 DEXIO95424 95 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 PDE6BP35913 854 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 TTLL12Q14166 644 aaPredicted RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 PPP4R3BQ5MIZ7 849 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 ZNF274Q96GC6 653 aaPredicted RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 CALML4Q96GE6 196 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 LMBRD1Q9NUN5 540 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 KRT2P35908 639 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 ZNF772Q68DY9 489 aaPredicted RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 SMIM5Q71RC9 77 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 LARGE2Q8N3Y3 721 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 RXRBP28702 533 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 ADD2P35612 726 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 EIF5P55010 431 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 RASGRF1Q13972 1273 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 TRMT1LQ7Z2T5 733 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 RRP36Q96EU6 259 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 GJD4Q96KN9 370 aaPredicted RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 C6orf50Q9HD87 102 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 RBM28Q9NW13 759 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 NARFQ9UHQ1 456 aa16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 TTF2Q9UNY4 1162 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-203ENST00000378679 DCAF8L1A6NGE4 600 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 GADD45BO75293 160 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 FOXO4P98177 505 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 TYRO3Q06418 890 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 CGNQ9P2M7 1197 aaKnown RBP16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 M0R2C6 588 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 NECTIN1Q15223 517 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 DOK7Q18PE1 504 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 UVSSAQ2YD98 709 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 KRT40Q6A162 431 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 ATL3Q6DD88 541 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 JCADQ9P266 1359 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 TCP10Q12799 353 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 RABL6Q3YEC7 729 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 LEO1Q8WVC0 666 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 MTMR6Q9Y217 621 aa16.23■□□□□ 0.19
SHROOM1-203ENST00000378679 SPATA31A1Q5TZJ5 1347 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 PARP1P09874 1014 aaKnown RBP16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 MCAMP43121 646 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 SKIDA1Q1XH10 827 aa16.22■□□□□ 0.19
SHROOM1-203ENST00000378679 WDR78Q5VTH9 848 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms