RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 PDE6BP35913 854 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 CCDC65Q8IXS2 484 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 ADCY5O95622 1261 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 LPIN2Q92539 896 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 TMEM94Q12767 1356 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 CHL1O00533 1208 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 ZBTB7BO15156 539 aaPredicted RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 GPR162Q16538 588 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 ZNF496Q96IT1 587 aaPredicted RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 TRIM35Q9UPQ4 493 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 TARBP1Q13395 1621 aaKnown RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 PPP2R5DQ14738 602 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 CCDC117Q8IWD4 279 aaPredicted RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 KIF18AQ8NI77 898 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 GBP3Q9H0R5 595 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 RTL1A6NKG5 1358 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 PHKG2P15735 406 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 EIF4A1P60842 406 aaKnown RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 DNM1Q05193 864 aaKnown RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 TCP10Q12799 353 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 GCKRQ14397 625 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 SPATA5Q8NB90 893 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 TIGD1Q96MW7 591 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 QTRT2Q9H974 415 aaKnown RBP11.07□□□□□ -0.64
COL4A6-202ENST00000372216 UGGT1Q9NYU2 1555 aa11.07□□□□□ -0.64
COL4A6-202ENST00000372216 SPTLC2O15270 562 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 KRT9P35527 623 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.06□□□□□ -0.64
COL4A6-202ENST00000372216 SHTN1A0MZ66 631 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 PPIP5K2O43314 1243 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 ZSCAN23Q3MJ62 389 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 CTAGE1Q96RT6 745 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 PSMA7O14818 248 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 NEMFO60524 1076 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 MRRFQ96E11 262 aaKnown RBP11.06□□□□□ -0.64
COL4A6-202ENST00000372216 NAP1L4Q99733 375 aaKnown RBP11.06□□□□□ -0.64
COL4A6-202ENST00000372216 ANO6Q4KMQ2 910 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 DTHD1Q6ZMT9 781 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 BCS1LQ9Y276 419 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 PLEKHG1Q9ULL1 1385 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 UBASH3AP57075 661 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 IRX5P78411 483 aaPredicted RBP11.06□□□□□ -0.64
COL4A6-202ENST00000372216 PPARDQ03181 441 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 ZSCAN30Q86W11 494 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 IMPG2Q9BZV3 1241 aa11.06□□□□□ -0.64
COL4A6-202ENST00000372216 CHD1O14646 1710 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 ESPNB1AK53 854 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 CTDSPL2Q05D32 466 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 SPAG5Q96R06 1193 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 MLH3Q9UHC1 1453 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 PER1O15534 1290 aaPredicted RBP11.05□□□□□ -0.64
COL4A6-202ENST00000372216 KRT5P13647 590 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 MAP9Q49MG5 647 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 CFAP58Q5T655 872 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 LRRC45Q96CN5 670 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 HOOK2Q96ED9 719 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 MCM3P25205 808 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 CTSWP56202 376 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 PLCB3Q01970 1234 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 GPHNQ9NQX3 736 aaPredicted RBP11.05□□□□□ -0.64
COL4A6-202ENST00000372216 NLRP1Q9C000 1473 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 FCHSD1Q86WN1 690 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 NACA2Q9H009 215 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 TAOK3Q9H2K8 898 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 GPAA1O43292 621 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 CNGA1P29973 690 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 ZNF174Q15697 407 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 IFI16Q16666 785 aaKnown RBP11.05□□□□□ -0.64
COL4A6-202ENST00000372216 LETM2Q2VYF4 491 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 PTPRTO14522 1441 aa11.05□□□□□ -0.64
COL4A6-202ENST00000372216 ZCCHC11Q5TAX3 1644 aaKnown RBP11.04□□□□□ -0.64
COL4A6-202ENST00000372216 C2CD5Q86YS7 1000 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 TGFBRAP1Q8WUH2 860 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 GCC2Q8IWJ2 1684 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 MYCLP12524 364 aaPredicted RBP11.04□□□□□ -0.64
COL4A6-202ENST00000372216 MAPKAPK5Q8IW41 473 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 APPBP2Q92624 585 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 SLC27A2O14975 620 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 RPS6KB1P23443 525 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 ERCC5P28715 1186 aaPredicted RBP11.04□□□□□ -0.64
COL4A6-202ENST00000372216 KMT5BQ4FZB7 885 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 PPP1R21Q6ZMI0 780 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 CERS3Q8IU89 383 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 GPIHBP1Q8IV16 184 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 TRPC5Q9UL62 973 aaPredicted RBP11.04□□□□□ -0.64
COL4A6-202ENST00000372216 ZMYM4Q5VZL5 1548 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 BMS1Q14692 1282 aaKnown RBP11.04□□□□□ -0.64
COL4A6-202ENST00000372216 FLAD1Q8NFF5 587 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 DLGAP5Q15398 846 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 NAA15Q9BXJ9 866 aaKnown RBP11.04□□□□□ -0.64
COL4A6-202ENST00000372216 PFDN4Q9NQP4 134 aa11.04□□□□□ -0.64
COL4A6-202ENST00000372216 SAMD9LQ8IVG5 1584 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 NEURL1BA8MQ27 555 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 KCNQ3O43525 872 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 AKR1B10O60218 316 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 PRDM1O75626 825 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 TCIRG1Q13488 830 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 NPC1L1Q9UHC9 1359 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 MAGI3Q5TCQ9 1506 aa11.03□□□□□ -0.64
COL4A6-202ENST00000372216 BRAPQ7Z569 592 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms