RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 RALYLQ86SE5 291 aaKnown RBP18.29■□□□□ 0.52
LIMS1-202ENST00000338045 LRRC2Q9BYS8 371 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 ANAPC4Q9UJX5 808 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 CHD4Q14839 1912 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 KIF13BQ9NQT8 1826 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 ANTXR2P58335 489 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 PKP1Q13835 747 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 STAG1Q8WVM7 1258 aa18.29■□□□□ 0.52
LIMS1-202ENST00000338045 AATFQ9NY61 560 aaKnown RBP eCLIP18.29■□□□□ 0.52
LIMS1-202ENST00000338045 PPP4CP60510 307 aa18.28■□□□□ 0.52
LIMS1-202ENST00000338045 MFSD14BQ5SR56 506 aa18.28■□□□□ 0.52
LIMS1-202ENST00000338045 NECAB1Q8N987 351 aa18.28■□□□□ 0.52
LIMS1-202ENST00000338045 PKNOX2Q96KN3 472 aa18.28■□□□□ 0.52
LIMS1-202ENST00000338045 CRNKL1Q9BZJ0 848 aaKnown RBP18.28■□□□□ 0.52
LIMS1-202ENST00000338045 SUGT1Q9Y2Z0 365 aa18.28■□□□□ 0.52
LIMS1-202ENST00000338045 ZDHHC9Q9Y397 364 aa18.28■□□□□ 0.52
LIMS1-202ENST00000338045 PRC1O43663 620 aa18.27■□□□□ 0.52
LIMS1-202ENST00000338045 LDHCP07864 332 aa18.27■□□□□ 0.52
LIMS1-202ENST00000338045 FGD1P98174 961 aa18.27■□□□□ 0.52
LIMS1-202ENST00000338045 AKNAD1Q5T1N1 836 aa18.27■□□□□ 0.52
LIMS1-202ENST00000338045 FAM163AQ96GL9 167 aaPredicted RBP18.27■□□□□ 0.52
LIMS1-202ENST00000338045 ATP8A2Q9NTI2 1148 aa18.27■□□□□ 0.52
LIMS1-202ENST00000338045 NEDD4P46934 1319 aa18.27■□□□□ 0.52
LIMS1-202ENST00000338045 GTF2IP78347 998 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 PPARAQ07869 468 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 CHST3Q7LGC8 479 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 GTF3C6Q969F1 213 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 CNNM2Q9H8M5 875 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 SMC3Q9UQE7 1217 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 TACC3Q9Y6A5 838 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 MROH7-TTC4A0A0A0MT08 1334 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 BRD1O95696 1058 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 KCNA3P22001 575 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 CTDSPL2Q05D32 466 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 DIXDC1Q155Q3 683 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 CERS3Q8IU89 383 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 NKX2-3Q8TAU0 364 aa18.26■□□□□ 0.51
LIMS1-202ENST00000338045 ZNF274Q96GC6 653 aaPredicted RBP18.26■□□□□ 0.51
LIMS1-202ENST00000338045 DCP1AQ9NPI6 582 aaPredicted RBP18.26■□□□□ 0.51
LIMS1-202ENST00000338045 PFKFB2O60825 505 aa18.25■□□□□ 0.51
LIMS1-202ENST00000338045 MCM4P33991 863 aa18.25■□□□□ 0.51
LIMS1-202ENST00000338045 GRIPAP1Q4V328 841 aa18.25■□□□□ 0.51
LIMS1-202ENST00000338045 PODNQ7Z5L7 613 aa18.25■□□□□ 0.51
LIMS1-202ENST00000338045 MTFR1LQ9H019 292 aa18.25■□□□□ 0.51
LIMS1-202ENST00000338045 RNF41Q9H4P4 317 aaPredicted RBP18.25■□□□□ 0.51
LIMS1-202ENST00000338045 B4E1Z4 1266 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 BAG3O95817 575 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 APOBRQ0VD83 1088 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 DOK7Q18PE1 504 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 MFSD6Q6ZSS7 791 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 CYB5R4Q7L1T6 521 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 TTLL6Q8N841 843 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 KRT23Q9C075 422 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 GAKO14976 1311 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 MYH2Q9UKX2 1941 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 GPR75-ASB3A0A0A6YYF3 556 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 ZBTB7AO95365 584 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 SBK1Q52WX2 424 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 CTR9Q6PD62 1173 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 SLF2Q8IX21 1173 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 TMEM87BQ96K49 555 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 GBP4Q96PP9 640 aa18.24■□□□□ 0.51
LIMS1-202ENST00000338045 MKRN1Q9UHC7 482 aaKnown RBP18.24■□□□□ 0.51
LIMS1-202ENST00000338045 FGRP09769 529 aa18.23■□□□□ 0.51
LIMS1-202ENST00000338045 PCP11498 1178 aaKnown RBP18.23■□□□□ 0.51
LIMS1-202ENST00000338045 DPEP1P16444 411 aa18.23■□□□□ 0.51
LIMS1-202ENST00000338045 GJB2P29033 226 aa18.23■□□□□ 0.51
LIMS1-202ENST00000338045 PDIA3P30101 505 aaKnown RBP18.23■□□□□ 0.51
LIMS1-202ENST00000338045 SCRN1Q12765 414 aa18.23■□□□□ 0.51
LIMS1-202ENST00000338045 STK3Q13188 491 aa18.23■□□□□ 0.51
LIMS1-202ENST00000338045 INCENPQ9NQS7 918 aa18.23■□□□□ 0.51
LIMS1-202ENST00000338045 GPHNQ9NQX3 736 aaPredicted RBP18.23■□□□□ 0.51
LIMS1-202ENST00000338045 BAZ2AQ9UIF9 1905 aaKnown RBP18.23■□□□□ 0.51
LIMS1-202ENST00000338045 CERS5Q8N5B7 392 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 SUPT20HQ8NEM7 779 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 UPF1Q92900 1129 aaKnown RBP eCLIP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 MTA3Q9BTC8 594 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 ZSWIM5Q9P217 1185 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 ANGEL1Q9UNK9 670 aaKnown RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 MINDY4BA8MYZ0 360 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 USP17L12C9JPN9 530 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 USP17L21D6R901 530 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 SH2B2O14492 632 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 TGFB2P61812 414 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 KIAA2012Q0VF49 1180 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 IGDCC4Q8TDY8 1250 aa18.22■□□□□ 0.51
LIMS1-202ENST00000338045 SH3RF3Q8TEJ3 882 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 LLPHQ9BRT6 129 aaKnown RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 NOL10Q9BSC4 688 aaKnown RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 ZNF219Q9P2Y4 722 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 ARPP21Q9UBL0 812 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-202ENST00000338045 G3V3G9 751 aa18.21■□□□□ 0.51
LIMS1-202ENST00000338045 C21orf2O43822 256 aa18.21■□□□□ 0.51
LIMS1-202ENST00000338045 KDM4AO75164 1064 aa18.21■□□□□ 0.51
LIMS1-202ENST00000338045 SYT1P21579 422 aa18.21■□□□□ 0.51
LIMS1-202ENST00000338045 FKBP1AP62942 108 aaKnown RBP18.21■□□□□ 0.51
LIMS1-202ENST00000338045 DCAF8Q5TAQ9 597 aa18.21■□□□□ 0.51
LIMS1-202ENST00000338045 DBNDD1Q9H9R9 158 aa18.21■□□□□ 0.51
LIMS1-202ENST00000338045 WDR33Q9C0J8 1336 aaKnown RBP18.21■□□□□ 0.51
LIMS1-202ENST00000338045 PDIA4P13667 645 aaKnown RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms