RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CTTNBP2NLQ9P2B4 639 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ARHGAP42A6NI28 874 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 SEPT2Q15019 361 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ANKRD20A4Q4UJ75 823 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ANKRD20A8PQ5CZ79 823 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ANKRD20A2Q5SQ80 823 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ANKRD20A1Q5TYW2 823 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 LCA5Q86VQ0 697 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 CCDC89Q8N998 374 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 SPINK5Q9NQ38 1064 aaPredicted RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 NUB1Q9Y5A7 615 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 LMNB2Q03252 620 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 MRPL46Q9H2W6 279 aaKnown RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 PALMDQ9NP74 551 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 RNASELQ05823 741 aaKnown RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 PPP2R5AQ15172 486 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 SPTLC2O15270 562 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 CALML3P27482 149 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 MCM7P33993 719 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 NFE2L2Q16236 605 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 CCDC93Q567U6 631 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ISM2Q6H9L7 571 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 HAUS7Q99871 368 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 BOLA2Q9H3K6 86 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 DACT1Q9NYF0 836 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ARHGAP4P98171 946 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 SLMAPQ14BN4 828 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 CCDC152Q4G0S7 254 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 FBXO41Q8TF61 875 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 KIFC2Q96AC6 838 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 KAT14Q9H8E8 782 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 HOMER3Q9NSC5 361 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 GFAPP14136 432 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 KCNA4P22459 653 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 KRT71Q3SY84 523 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 BEGAINQ9BUH8 593 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 TXLNGQ9NUQ3 528 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 FRMD4BQ9Y2L6 1034 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 SYNRGQ9UMZ2 1314 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 SPOPO43791 374 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 TMTC2Q8N394 836 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ECHDC1Q9NTX5 307 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 CROCCQ5TZA2 2017 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 MMRN2Q9H8L6 949 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 ZNF652Q9Y2D9 606 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 KIAA1107Q9UPP5 1409 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 NCOA2Q15596 1464 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 CLTAP09496 248 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 TMX3Q96JJ7 454 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 EIF2AK4Q9P2K8 1649 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 APOEP02649 317 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 PHBP35232 272 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 RTN1Q16799 776 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SULT6B1Q6IMI4 303 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 THEMISQ8N1K5 641 aaPredicted RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 PDZD8Q8NEN9 1154 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 PSPC1Q8WXF1 523 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SECISBP2LQ93073 1101 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 INTS4Q96HW7 963 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 AGTPBP1Q9UPW5 1226 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 ZBTB12Q9Y330 459 aaPredicted RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 NCAPD3P42695 1498 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 RALGAPBQ86X10 1494 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 E9PMD0 336 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 STX2P32856 288 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 LIN9Q5TKA1 542 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 ARHGAP6O43182 974 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 HS2ST1Q7LGA3 356 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 ARHGEF9O43307 516 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 FLOT1O75955 427 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SPDL1Q96EA4 605 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 CAPS2Q9BXY5 557 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 ABCF2Q9UG63 623 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 BAG5Q9UL15 447 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 MX2P20592 715 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SMC5Q8IY18 1101 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 NLRP7Q8WX94 980 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 DTNBP1Q96EV8 351 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 PAWRQ96IZ0 340 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 RILPQ96NA2 401 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 IWS1Q96ST2 819 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SERPINB6P35237 376 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 MYL5Q02045 173 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 NUP58Q9BVL2 599 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SMARCA5O60264 1052 aaPredicted RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 EPB41P11171 864 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 APBA1Q02410 837 aa6.87□□□□□ -1.31
CSMD1-201ENST00000335551 LEO1Q8WVC0 666 aaPredicted RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 NUCKS1Q9H1E3 243 aaKnown RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 SCHIP1Q9P0W5 487 aaPredicted RBP6.87□□□□□ -1.31
CSMD1-201ENST00000335551 POTEB3A0JP26 581 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 HSPA8P11142 646 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 SKIP12755 728 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 GNAQP50148 359 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 IFIT5Q13325 482 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 DYNC1I2Q13409 638 aaKnown RBP6.86□□□□□ -1.31
CSMD1-201ENST00000335551 HSP90AA4PQ58FG1 418 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 C9orf84Q5VXU9 1444 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 POTEBQ6S5H4 581 aa6.86□□□□□ -1.31
CSMD1-201ENST00000335551 RBM42Q9BTD8 480 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms