RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZC3H6P61129 1189 aaKnown RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 RACK1P63244 317 aaKnown RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 NRG1Q02297 640 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 CAMK2GQ13555 558 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 PDE3AQ14432 1141 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 EXOSC6Q5RKV6 272 aaKnown RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 MAP1SQ66K74 1059 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 LENG1Q96BZ8 264 aaPredicted RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 RUSC1Q9BVN2 902 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 RNF208Q9H0X6 261 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 CACNA2D2Q9NY47 1150 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 SUPT16HQ9Y5B9 1047 aaKnown RBP5.44□□□□□ -1.54
HMGB1-201ENST00000326004 PCDHGB7Q9Y5F8 929 aa5.44□□□□□ -1.54
HMGB1-201ENST00000326004 ECEL1O95672 775 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 CTSBP07858 339 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 SELPP16109 830 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 GARTP22102 1010 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 GRIK4Q16099 956 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 KIF4BQ2VIQ3 1234 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 SNAP47Q5SQN1 464 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 RASIP1Q5U651 963 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 KIAA1211Q6ZU35 1233 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 ACAD11Q709F0 780 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 KIAA0825Q8IV33 1275 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 GRIN3AQ8TCU5 1115 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 UBASH3BQ8TF42 649 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 GAL3ST3Q96A11 431 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 ACSBG1Q96GR2 724 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 C8orf37Q96NL8 207 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 SPON2Q9BUD6 331 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 TMPRSS13Q9BYE2 586 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 CCDC86Q9H6F5 360 aaKnown RBP5.43□□□□□ -1.54
HMGB1-201ENST00000326004 ADAMTS1Q9UHI8 967 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 PCDHB5Q9Y5E4 795 aa5.43□□□□□ -1.54
HMGB1-201ENST00000326004 ROBO2Q9HCK4 1378 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 F6X3S4 739 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 GREM1O60565 184 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 WISP1O95388 367 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 SLFN14P0C7P3 912 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 GNL2Q13823 731 aaKnown RBP5.42□□□□□ -1.54
HMGB1-201ENST00000326004 SHISA2Q6UWI4 295 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 GPBAR1Q8TDU6 330 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 ZNF296Q8WUU4 475 aaPredicted RBP5.42□□□□□ -1.54
HMGB1-201ENST00000326004 GATAD2BQ8WXI9 593 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 SPATA32Q96LK8 384 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 NT5C1AQ9BXI3 368 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 ZC3H12CQ9C0D7 883 aaKnown RBP5.42□□□□□ -1.54
HMGB1-201ENST00000326004 SUGCTQ9HAC7 445 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 CYP4F12Q9HCS2 524 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 USP21Q9UK80 565 aa5.42□□□□□ -1.54
HMGB1-201ENST00000326004 F8W735 103 aaPredicted RBP5.41□□□□□ -1.54
HMGB1-201ENST00000326004 ZNF862O60290 1169 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 AOC2O75106 756 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 DLGAP3O95886 979 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 LIG1P18858 919 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 FAM160A1Q05DH4 1040 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 SEPT6Q14141 434 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 NUTM2GQ5VZR2 741 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 ANKRD34AQ69YU3 496 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 FBXL19Q6PCT2 694 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 FAM196AQ6ZSG2 479 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 GOLM1Q8NBJ4 401 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 SMG8Q8ND04 991 aaKnown RBP5.41□□□□□ -1.54
HMGB1-201ENST00000326004 WDR18Q9BV38 432 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 LRRC3Q9BY71 257 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 ACBD3Q9H3P7 528 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 AKTIPQ9H8T0 292 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 RAD18Q9NS91 495 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 PCDHA4Q9UN74 947 aa5.41□□□□□ -1.54
HMGB1-201ENST00000326004 CILPO75339 1184 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 BPNT1O95861 308 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 F13A1P00488 732 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 GJA8P48165 433 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 RPL6Q02878 288 aaKnown RBP5.4□□□□□ -1.54
HMGB1-201ENST00000326004 PAK2Q13177 524 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 MPP2Q14168 576 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 ADGRE1Q14246 886 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 MPRIPQ6WCQ1 1025 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 BNC2Q6ZN30 1099 aaPredicted RBP5.4□□□□□ -1.54
HMGB1-201ENST00000326004 Q6ZS46 218 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 CEP41Q9BYV8 373 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 INPP5FQ9Y2H2 1132 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 PCDHGC5Q9Y5F6 944 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 SNCAIPQ9Y6H5 919 aa5.4□□□□□ -1.54
HMGB1-201ENST00000326004 FAM221AA4D161 298 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 PTPN11Q06124 597 aaPredicted RBP5.39□□□□□ -1.55
HMGB1-201ENST00000326004 NAALADL2Q58DX5 795 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 FDX2Q6P4F2 183 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 HDXQ7Z353 690 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 SLC43A3Q8NBI5 491 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 RASGRP4Q8TDF6 673 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 JARID2Q92833 1246 aaPredicted RBP5.39□□□□□ -1.55
HMGB1-201ENST00000326004 GPRASP2Q96D09 838 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 WDR89Q96FK6 387 aaPredicted RBP5.39□□□□□ -1.55
HMGB1-201ENST00000326004 TINF2Q9BSI4 451 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 CAPN10Q9HC96 672 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 TACC3Q9Y6A5 838 aa5.39□□□□□ -1.55
HMGB1-201ENST00000326004 TMPRSS2O15393 492 aa5.38□□□□□ -1.55
HMGB1-201ENST00000326004 TIAF1O95411 115 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms