RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ADGRA1Q86SQ6 560 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 CCDC83Q8IWF9 413 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 TBC1D22AQ8WUA7 517 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 TCEANC2Q96MN5 208 aa26.81■■□□□ 1.88
CDX1-201ENST00000231656 FHDC1Q9C0D6 1143 aaPredicted RBP26.81■■□□□ 1.88
CDX1-201ENST00000231656 FOXP2O15409 715 aa26.8■■□□□ 1.88
CDX1-201ENST00000231656 ECE2O60344 883 aa26.8■■□□□ 1.88
CDX1-201ENST00000231656 IGSF3O75054 1194 aa26.8■■□□□ 1.88
CDX1-201ENST00000231656 MFSD14BQ5SR56 506 aa26.8■■□□□ 1.88
CDX1-201ENST00000231656 MCTP1Q6DN14 999 aa26.8■■□□□ 1.88
CDX1-201ENST00000231656 ARFGEF1Q9Y6D6 1849 aa26.8■■□□□ 1.88
CDX1-201ENST00000231656 GRIK5Q16478 980 aa26.79■■□□□ 1.88
CDX1-201ENST00000231656 TTLL5Q6EMB2 1281 aa26.79■■□□□ 1.88
CDX1-201ENST00000231656 AIDAQ96BJ3 306 aa26.79■■□□□ 1.88
CDX1-201ENST00000231656 ZNF277Q9NRM2 450 aaPredicted RBP26.79■■□□□ 1.88
CDX1-201ENST00000231656 SMC3Q9UQE7 1217 aa26.79■■□□□ 1.88
CDX1-201ENST00000231656 UTRNP46939 3433 aa26.79■■□□□ 1.88
CDX1-201ENST00000231656 TMED8Q6PL24 325 aaPredicted RBP26.78■■□□□ 1.88
CDX1-201ENST00000231656 DZIP1Q86YF9 867 aaKnown RBP26.78■■□□□ 1.88
CDX1-201ENST00000231656 KCNQ5Q9NR82 932 aa26.78■■□□□ 1.88
CDX1-201ENST00000231656 WDR33Q9C0J8 1336 aaKnown RBP26.78■■□□□ 1.88
CDX1-201ENST00000231656 MBD4O95243 580 aa26.77■■□□□ 1.88
CDX1-201ENST00000231656 FOXD4L5Q5VV16 416 aaPredicted RBP26.77■■□□□ 1.88
CDX1-201ENST00000231656 MIGA1Q8NAN2 632 aa26.77■■□□□ 1.88
CDX1-201ENST00000231656 FOXD4L4Q8WXT5 416 aaPredicted RBP26.77■■□□□ 1.88
CDX1-201ENST00000231656 FBXW7Q969H0 707 aa26.77■■□□□ 1.88
CDX1-201ENST00000231656 STRBPQ96SI9 672 aaKnown RBP26.77■■□□□ 1.88
CDX1-201ENST00000231656 VPS33BQ9H267 617 aa26.77■■□□□ 1.88
CDX1-201ENST00000231656 NECAB1Q8N987 351 aa26.76■■□□□ 1.88
CDX1-201ENST00000231656 ZNF646O15015 1829 aaPredicted RBP26.76■■□□□ 1.87
CDX1-201ENST00000231656 HMGB1P09429 215 aaKnown RBP26.76■■□□□ 1.87
CDX1-201ENST00000231656 GZF1Q9H116 711 aaPredicted RBP26.76■■□□□ 1.87
CDX1-201ENST00000231656 ARMT1Q9H993 441 aa26.76■■□□□ 1.87
CDX1-201ENST00000231656 LMBRD1Q9NUN5 540 aa26.76■■□□□ 1.87
CDX1-201ENST00000231656 MYH2Q9UKX2 1941 aa26.76■■□□□ 1.87
CDX1-201ENST00000231656 TAOK3Q9H2K8 898 aa26.75■■□□□ 1.87
CDX1-201ENST00000231656 E7EWF7 191 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 NFKBIEO00221 500 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 COL4A5P29400 1685 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 LCORLQ8N3X6 602 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 LARGE2Q8N3Y3 721 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 CERS5Q8N5B7 392 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 CTNNA3Q9UI47 895 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 MAGEB6P1A0A0J9YX57 407 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 GJB2P29033 226 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 STRIP1Q5VSL9 837 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 CHAMP1Q96JM3 812 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 RIOK1Q9BRS2 568 aaKnown RBP26.74■■□□□ 1.87
CDX1-201ENST00000231656 SUGT1Q9Y2Z0 365 aa26.74■■□□□ 1.87
CDX1-201ENST00000231656 YDJCA8MPS7 323 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 SYT1P21579 422 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 IARSP41252 1262 aaKnown RBP26.73■■□□□ 1.87
CDX1-201ENST00000231656 GSTO1P78417 241 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 DIXDC1Q155Q3 683 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 Q6ZUG5 572 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 DHX32Q7L7V1 743 aaKnown RBP26.73■■□□□ 1.87
CDX1-201ENST00000231656 SYT17Q9BSW7 474 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 MXD3Q9BW11 206 aa26.73■■□□□ 1.87
CDX1-201ENST00000231656 PSME4Q14997 1843 aa26.72■■□□□ 1.87
CDX1-201ENST00000231656 EXOSC10Q01780 885 aaKnown RBP26.72■■□□□ 1.87
CDX1-201ENST00000231656 USP17L3A6NCW0 530 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 USP17L4A6NCW7 530 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 FGAP02671 866 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 DYNLL1P63167 89 aaKnown RBP26.71■■□□□ 1.87
CDX1-201ENST00000231656 KLHL40Q2TBA0 621 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 USP17L1Q7RTZ2 530 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 STX6O43752 255 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 DACT2Q5SW24 774 aa26.71■■□□□ 1.87
CDX1-201ENST00000231656 ZSCAN22P10073 491 aaPredicted RBP26.7■■□□□ 1.86
CDX1-201ENST00000231656 GNAT2P19087 354 aa26.7■■□□□ 1.86
CDX1-201ENST00000231656 FKBP1AP62942 108 aaKnown RBP26.7■■□□□ 1.86
CDX1-201ENST00000231656 AATFQ9NY61 560 aaKnown RBP eCLIP26.7■■□□□ 1.86
CDX1-201ENST00000231656 LTBP3Q9NS15 1303 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 PATL2C9JE40 543 aaKnown RBP26.69■■□□□ 1.86
CDX1-201ENST00000231656 APPP05067 770 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 LDHCP07864 332 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 AGXT2Q9BYV1 514 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 SLC4A4Q9Y6R1 1079 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 MROH7-TTC4A0A0A0MT08 1334 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 PRKAB2O43741 272 aa26.69■■□□□ 1.86
CDX1-201ENST00000231656 IMMTQ16891 758 aaKnown RBP26.69■■□□□ 1.86
CDX1-201ENST00000231656 TCHHQ07283 1943 aa26.68■■□□□ 1.86
CDX1-201ENST00000231656 GSG1L2A8MUP6 293 aa26.68■■□□□ 1.86
CDX1-201ENST00000231656 PRPF40AO75400 957 aaKnown RBP26.68■■□□□ 1.86
CDX1-201ENST00000231656 GTF3C6Q969F1 213 aa26.68■■□□□ 1.86
CDX1-201ENST00000231656 DDX49Q9Y6V7 483 aaKnown RBP26.68■■□□□ 1.86
CDX1-201ENST00000231656 F8W031 263 aaPredicted RBP26.67■■□□□ 1.86
CDX1-201ENST00000231656 SLF2Q8IX21 1173 aa26.67■■□□□ 1.86
CDX1-201ENST00000231656 NIM1KQ8IY84 436 aa26.67■■□□□ 1.86
CDX1-201ENST00000231656 LRRC2Q9BYS8 371 aa26.67■■□□□ 1.86
CDX1-201ENST00000231656 EPB41L4AQ9HCS5 686 aaPredicted RBP26.67■■□□□ 1.86
CDX1-201ENST00000231656 TTF2Q9UNY4 1162 aaKnown RBP26.67■■□□□ 1.86
CDX1-201ENST00000231656 FSD2A1L4K1 749 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 DTNBO60941 627 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 BRF1Q92994 677 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 FAM163AQ96GL9 167 aaPredicted RBP26.66■■□□□ 1.86
CDX1-201ENST00000231656 MTMR6Q9Y217 621 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 RASSF7Q02833 373 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 ALX1Q15699 326 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 IFNL3Q8IZI9 196 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 202.7 ms