RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 PLIN2Q99541 437 aa16.3■□□□□ 0.2
SPTLC2-201ENST00000216484 LGSNQ5TDP6 509 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 TUBB4AP04350 444 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 KLHL40Q2TBA0 621 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 LDHAL6AQ6ZMR3 332 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 RTEL1-TNFRSF6BF6WH68 1400 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 SPDYE16A6NNV3 312 aaPredicted RBP16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 BACH1O14867 736 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 SERPINB6P35237 376 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 SPDYE2Q495Y8 402 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 NUB1Q9Y5A7 615 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 TRAF1Q13077 416 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 CTNND2Q9UQB3 1225 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 GSTA1P08263 222 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 GSTA2P09210 222 aa16.29■□□□□ 0.2
SPTLC2-201ENST00000216484 AKR1B15C9JRZ8 316 aaPredicted RBP16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 TYRO3Q06418 890 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 TMTC2Q8N394 836 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 ESR2Q92731 530 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 MAP3K2Q9Y2U5 619 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 GOLGA6BA6NDN3 693 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 FAM69CQ0P6D2 419 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 NBPF6Q5VWK0 638 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 PPP4R4Q6NUP7 873 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 RRP36Q96EU6 259 aaKnown RBP16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 CABS1Q96KC9 395 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 NBPF4Q96M43 638 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 DACT1Q9NYF0 836 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 MYOM3Q5VTT5 1437 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 ST5P78524 1137 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 CFAP70Q5T0N1 1121 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 SFMBT1Q9UHJ3 866 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 CLEC11AQ9Y240 323 aa16.28■□□□□ 0.2
SPTLC2-201ENST00000216484 LIN9Q5TKA1 542 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 A6NNZ2 444 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 CASP2P42575 452 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 PPFIA1Q13136 1202 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 TUBB8Q3ZCM7 444 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 CNNM2Q9H8M5 875 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 KIF21BO75037 1637 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 RPL13P26373 211 aaKnown RBP16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 BSPRYQ5W0U4 402 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 KRT79Q5XKE5 535 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 OGFOD1Q8N543 542 aa16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 DHX29Q7Z478 1369 aaKnown RBP16.27■□□□□ 0.2
SPTLC2-201ENST00000216484 Q6ZUG5 572 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 C16orf71Q8IYS4 520 aaPredicted RBP16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 RUFY4Q6ZNE9 571 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 ORC6Q9Y5N6 252 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 HNRNPCL2B2RXH8 293 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 HNRNPCL1O60812 293 aaKnown RBP16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 MMEL1Q495T6 779 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 CCDC93Q567U6 631 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 UBE3BQ7Z3V4 1068 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 SKA2Q8WVK7 121 aaPredicted RBP16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 CHMP6Q96FZ7 201 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 USTQ9Y2C2 406 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 FAN1Q9Y2M0 1017 aa16.27■□□□□ 0.19
SPTLC2-201ENST00000216484 XRCC6P12956 609 aaKnown RBP eCLIP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 C4orf50Q6ZRC1 276 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 BIN2Q9UBW5 565 aaPredicted RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 DNM1Q05193 864 aaKnown RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 FRMD3A2A2Y4 597 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 SH3BGRP55822 239 aaPredicted RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 TNFAIP3P21580 790 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 JADE1Q6IE81 842 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 RASEFQ8IZ41 740 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 NAP1L4Q99733 375 aaKnown RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 SUPT6HQ7KZ85 1726 aaKnown RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 HP1BP3Q5SSJ5 553 aaPredicted RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 THUMPD2Q9BTF0 503 aaKnown RBP16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 SLC4A4Q9Y6R1 1079 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 ESYT2A0FGR8 921 aa16.26■□□□□ 0.19
SPTLC2-201ENST00000216484 ATXN8OSP0DMR3 200 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 ARHGAP4P98171 946 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 NAPGQ99747 312 aaPredicted RBP16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 EIF2AQ9BY44 585 aaKnown RBP16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 ZGPATQ8N5A5 531 aaKnown RBP16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 PPP1R9AQ9ULJ8 1098 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 GNAQP50148 359 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 CALML3P27482 149 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 TRIM56Q9BRZ2 755 aaKnown RBP16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 AP1ARQ63HQ0 302 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 POMGNT1Q8WZA1 660 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 KRT12Q99456 494 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 RIOK1Q9BRS2 568 aaKnown RBP16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 RIPOR2Q9Y4F9 1068 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 TRIM75PA6NK02 468 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 RFC4P35249 363 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 SMTNP53814 917 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 DCLK2Q8N568 766 aa16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 NOC4LQ9BVI4 516 aaKnown RBP16.25■□□□□ 0.19
SPTLC2-201ENST00000216484 KSR1Q8IVT5 923 aa16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 ASIC2Q16515 512 aa16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 STAG1Q8WVM7 1258 aa16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 SCYL1Q96KG9 808 aa16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 SPTLC2O15270 562 aa16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 PSMB7Q99436 277 aa16.24■□□□□ 0.19
SPTLC2-201ENST00000216484 SMARCA2P51531 1590 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms