RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 TIAF1O95411 115 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 SAMD5Q5TGI4 173 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 C9orf139Q6ZV77 190 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 RFLNBQ8N5W9 214 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 TIMM21Q9BVV7 248 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 SOCS3O14543 225 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 PRSS23O95084 383 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 GAGE2AQ6NT46 116 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 MEGF9Q9H1U4 602 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 PTPRFP10586 1907 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 TIMP3P35625 211 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF497Q6ZNH5 498 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 MDS2Q8NDY4 140 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 IGKV2-40A0A087WW87 121 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 TRAV8-1A0A0A6YYK1 113 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 LINC01619G3V211 115 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 IGKV2D-40P01614 121 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 EIF4EBP2Q13542 120 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 TPTE2P1Q5T6R2 138 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 ST6GALNAC3Q8NDV1 305 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 FBLIM1Q8WUP2 373 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 PQLC2LA1A4F0 135 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 LYNX1G3V0Z9 82 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 LYNX1P0DP58 116 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 RPL15P61313 204 aaKnown RBP4.6□□□□□ -1.67
SCN1A-209ENST00000635750 ZNF479Q96JC4 524 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 DMRT1Q9Y5R6 373 aa4.6□□□□□ -1.67
SCN1A-209ENST00000635750 CTSBP07858 339 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 OCIAD2Q56VL3 154 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 MRAPQ8TCY5 172 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 IMMP2LQ96T52 175 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 CSTL1Q9H114 145 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 A8MXK9 166 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 Q96MF0 132 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 RNF5Q99942 180 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 GNB1LQ9BYB4 327 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 COL18A1P39060 1754 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 TET1Q8NFU7 2136 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 CLPSL1A2RUU4 121 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 ATP5G3P48201 142 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 PRDM13Q9H4Q3 707 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 SLAQ13239 276 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 AMELYQ99218 206 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 SLC25A39Q9BZJ4 359 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-209ENST00000635750 TRAV8-3A0A0A6YYJ7 113 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 A0A1W2PRE2 83 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 F8VVB4 439 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 F8VWA3 439 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 J3QKU1 62 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 PLA2G10O15496 165 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 HSD52Q0P140 79 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 PMVKQ15126 192 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 TRPT1Q86TN4 253 aaKnown RBP4.59□□□□□ -1.67
SCN1A-209ENST00000635750 LY6G5BQ8NDX9 201 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 OSTCQ9NRP0 149 aa4.59□□□□□ -1.67
SCN1A-209ENST00000635750 IGHV1-18A0A0C4DH31 117 aa4.59□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM14DPA8MWL7 114 aa4.59□□□□□ -1.68
SCN1A-209ENST00000635750 EGR2P11161 476 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-209ENST00000635750 UBL5Q9BZL1 73 aa4.59□□□□□ -1.68
SCN1A-209ENST00000635750 NPDC1Q9NQX5 325 aaPredicted RBP4.59□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF98A6NK75 572 aa4.59□□□□□ -1.68
SCN1A-209ENST00000635750 SIGLEC5O15389 551 aa4.59□□□□□ -1.68
SCN1A-209ENST00000635750 DAZ1Q9NQZ3 744 aaKnown RBP4.59□□□□□ -1.68
SCN1A-209ENST00000635750 PMS2P5A8MQ11 134 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 RHODO00212 210 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 AZU1P20160 251 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 MRPL14Q6P1L8 145 aaKnown RBP4.58□□□□□ -1.68
SCN1A-209ENST00000635750 BRD3OSQ6XYD6 125 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 IL17RELQ6ZVW7 336 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM158Q8WZ71 300 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 FRMPD3Q5JV73 1810 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 RNF223E7ERA6 249 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SEC61GP60059 68 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 A0A087WWC5 75 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 IGHV1-3A0A0C4DH29 117 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 CD160O95971 181 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 PCP4P48539 62 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 NDPQ00604 133 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 FOXL1Q12952 345 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 KLF17Q5JT82 389 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-209ENST00000635750 LHFPL4Q7Z7J7 247 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 NDUFAF3Q9BU61 184 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 ACACAQ13085 2346 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 IGHV1-46P01743 117 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 LINC00271P0C7V0 271 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SMIM10L1P0DMW3 83 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM200BQ69YZ2 307 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SMIM10Q96HG1 83 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SCN10AQ9Y5Y9 1956 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 A0A0G2JMM0 328 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 A0A1W2PPB8 328 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 A0A1W2PRS3 328 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 KIR3DP1A8MWS1 328 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM258P61165 79 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 RPL23P62829 140 aaKnown RBP4.58□□□□□ -1.68
SCN1A-209ENST00000635750 CFHR3Q02985 330 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 KLRD1Q13241 179 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 TSKUQ8WUA8 353 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SPXQ9BT56 116 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SELENOKQ9Y6D0 94 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms