RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FAM173AQ9BQD7 235 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 HIGD1BQ9P298 99 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 SOX21Q9Y651 276 aaPredicted RBP8.3□□□□□ -1.08
VPS39-214ENST00000614932 COL27A1Q8IZC6 1860 aaPredicted RBP8.3□□□□□ -1.08
VPS39-214ENST00000614932 IGKV1-6A0A0C4DH72 117 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 A0A1B0GXF2 115 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 MPDU1O75352 247 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 MEOX1P50221 254 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 RBM11P57052 281 aaKnown RBP8.3□□□□□ -1.08
VPS39-214ENST00000614932 ERVK11-1P61568 191 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 Q6ZSR3 168 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 FOXL2NBQ6ZUU3 175 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 BORCS8Q96FH0 119 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 DNAJC30Q96LL9 226 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 KIR2DL4Q99706 377 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 ZNF355PQ9NSJ1 428 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 DUSP13Q9UII6 198 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 ZFHX2Q9C0A1 2572 aaPredicted RBP8.3□□□□□ -1.08
VPS39-214ENST00000614932 TCRBV4S1A1TA0A5B7 111 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 TMEM262E9PQX1 116 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 RBP4P02753 201 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 NMUP48645 174 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 DEFB124Q8NES8 71 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 SLC25A33Q9BSK2 321 aa8.3□□□□□ -1.08
VPS39-214ENST00000614932 NGFP01138 241 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 CSN1S1P47710 185 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 TCTAP57738 103 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 PIP4P1Q86T03 277 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 FGFRL1Q8N441 504 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 PPDPFLQ8WWR9 84 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 IGF2BP2-AS1Q96M15 143 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 TMUB1Q9BVT8 246 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 CHEK1O14757 476 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 CACNA1GO43497 2377 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 ZNF883P0CG24 379 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 ZNF138P52744 262 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 HBBP68871 147 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 FAM231DQ6ZW35 169 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 HS3ST6Q96QI5 342 aa8.29□□□□□ -1.08
VPS39-214ENST00000614932 PRR14LQ5THK1 2151 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 HIGD1CA8MV81 97 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 ZG16O60844 167 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 CCL11P51671 97 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 LGALS9BQ3B8N2 356 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 CFAP126Q5VTH2 177 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 LGALS9CQ6DKI2 356 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 PIP4P2Q8N4L2 257 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 HSD17B10Q99714 261 aaKnown RBP8.28□□□□□ -1.08
VPS39-214ENST00000614932 UBTD1Q9HAC8 227 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 GVINP1Q7Z2Y8 2422 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 MGST3O14880 152 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 KLK10O43240 276 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 MIC13Q5XKP0 118 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 PCSK4Q6UW60 755 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 CEND1Q8N111 149 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 RPEQ96AT9 228 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 SNRNP40Q96DI7 357 aaKnown RBP8.28□□□□□ -1.08
VPS39-214ENST00000614932 OTOGLQ3ZCN5 2332 aa8.28□□□□□ -1.08
VPS39-214ENST00000614932 NPIPB6E9PJ23 425 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 SP1P08047 785 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 ZNF688P0C7X2 276 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 CD24P25063 80 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 SMCPP49901 116 aaPredicted RBP8.27□□□□□ -1.09
VPS39-214ENST00000614932 CHAC1Q9BUX1 264 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 SMG1Q96Q15 3661 aaKnown RBP8.27□□□□□ -1.09
VPS39-214ENST00000614932 EVI2AP22794 236 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 GLRXP35754 106 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 POU2AF1Q16633 256 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 RRN3P1Q2M238 152 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 ZNF808Q8N4W9 903 aaPredicted RBP8.27□□□□□ -1.09
VPS39-214ENST00000614932 CARD19Q96LW7 228 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 ZNF488Q96MN9 340 aa8.27□□□□□ -1.09
VPS39-214ENST00000614932 RP1L1Q8IWN7 2480 aaPredicted RBP8.27□□□□□ -1.09
VPS39-214ENST00000614932 TMEM213A2RRL7 107 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 C16orf97H3BN30 126 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 DNPH1O43598 174 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 PRR30Q53SZ7 412 aaPredicted RBP8.26□□□□□ -1.09
VPS39-214ENST00000614932 ZDHHC16Q969W1 377 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 SNCGO76070 127 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 MPV17P39210 176 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 EFNB3Q15768 340 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 C12orf74Q32Q52 190 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 Q6Q795 121 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 RBMXL3Q8N7X1 1067 aaKnown RBP8.26□□□□□ -1.09
VPS39-214ENST00000614932 AJUBAQ96IF1 538 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 AP5S1Q9NUS5 200 aa8.26□□□□□ -1.09
VPS39-214ENST00000614932 MOSP00540 346 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 DAZAP2Q15038 168 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 ASPHD1Q5U4P2 390 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 TREML4Q6UXN2 200 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 OR8A1Q8NGG7 326 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 MGST2Q99735 147 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 HEYLQ9NQ87 328 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 TMEM167BQ9NRX6 74 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 PRRG2O14669 202 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 WT1P19544 449 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 MFAP4P55083 255 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 PCBD1P61457 104 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 HOXA4Q00056 320 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM214BQ7L5A3 538 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms