RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 SRD5A1P18405 259 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 TFF3Q07654 80 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 TMEM14EPQ6UXP3 125 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 THBDP07204 575 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 PEBP1P30086 187 aaKnown RBP4.12□□□□□ -1.75
VPS13D-213ENST00000613099 ID1P41134 155 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 FAM53AQ6NSI3 398 aaPredicted RBP4.12□□□□□ -1.75
VPS13D-213ENST00000613099 YPEL4Q96NS1 127 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 SLC25A39Q9BZJ4 359 aaPredicted RBP4.12□□□□□ -1.75
VPS13D-213ENST00000613099 SONP18583 2426 aaKnown RBP4.12□□□□□ -1.75
VPS13D-213ENST00000613099 FAM90A27PA6NNH2 459 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 CT55Q8WUE5 264 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 TIMM23O14925 209 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 IGHMP01871 453 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 IL11P20809 199 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 ZNF714Q96N38 554 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 NPIPB11E5RHQ5 1161 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 J3QT63 122 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 ETV2O00321 342 aaPredicted RBP4.12□□□□□ -1.75
VPS13D-213ENST00000613099 CXCL5P42830 114 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 HCSTQ9UBK5 93 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 IGHV3-64DA0A0J9YX35 117 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 DSCR9P59020 149 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 SLC25A15Q9Y619 301 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 RFNGQ9Y644 331 aa4.12□□□□□ -1.75
VPS13D-213ENST00000613099 QRFPP83859 136 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 IFI27L2Q9H2X8 130 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 ADAMTS9Q9P2N4 1935 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TCRBV4S1A1TA0A5B7 111 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 Q71RC1 249 aaPredicted RBP4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TMEM243Q9BU79 118 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 FSCN3Q9NQT6 498 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TCF20Q9UGU0 1960 aaKnown RBP4.11□□□□□ -1.75
VPS13D-213ENST00000613099 FOXC1Q12948 553 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TCF19Q9Y242 345 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 PHLDA3Q9Y5J5 127 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TRAV17A0A0B4J275 112 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 IGF2-ASQ6U949 168 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 V9GYV3 84 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 SCRT1Q9BWW7 348 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 IMUPQ9GZP8 106 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TLN1Q9Y490 2541 aaKnown RBP4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TANC2Q9HCD6 1990 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 TRAV12-3A0A0B4J271 114 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 RNF5Q99942 180 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 FAM231DQ6ZW35 169 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 LINC00479Q96M42 142 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 LIME1Q9H400 295 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 VSIRQ9H7M9 311 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 CENPVL3A0A0U1RRI6 287 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 FOLR3P41439 243 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 DEFB110Q30KQ9 67 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 MIR17HGQ75NE6 70 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 DTX2Q86UW9 622 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 CENPVL1A0A0U1RR11 272 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 PPP1R32Q7Z5V6 425 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 NPIPB3Q92617 1050 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 LMO7DNF2Z398 122 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 HIST1H4AP62805 103 aaKnown RBP4.11□□□□□ -1.75
VPS13D-213ENST00000613099 FAM78AQ5JUQ0 283 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 MDP1Q86V88 176 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 MUC6Q6W4X9 2439 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 SORL1Q92673 2214 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 MPV17P39210 176 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 EFNB3Q15768 340 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 PTCRAQ6ISU1 281 aaPredicted RBP4.11□□□□□ -1.75
VPS13D-213ENST00000613099 LRRK2Q5S007 2527 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 SPATA12Q7Z6I5 190 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 WFDC3Q8IUB2 231 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 GATD1Q8NB37 220 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 LOXL2Q9Y4K0 774 aa4.11□□□□□ -1.75
VPS13D-213ENST00000613099 OOSP1A8MZH6 123 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 PROCRQ9UNN8 238 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 WDR83OSQ9Y284 106 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 ZG16O60844 167 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 NRGNQ92686 78 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 A0A0B4J2C4 111 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 A0A1B0GX51 115 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 IGLV3-19P01714 112 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 SHISA5Q8N114 240 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 LINC01465Q8N7H1 131 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 ARHGAP21Q5T5U3 1957 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 E9PLD3 99 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 IFI27P40305 119 aaPredicted RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RUNX3Q13761 415 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 ANAPC10Q9UM13 185 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 EXPH5Q8NEV8 1989 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 PPIFP30405 207 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 FAM57AQ8TBR7 257 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 GTSF1Q8WW33 167 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 AMELYQ99218 206 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 TRAV21A0A0B4J279 112 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RBMY1BA6NDE4 496 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RBMY1EA6NEQ0 496 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RHODO00212 210 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 NUPR1O60356 82 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RBMY1DP0C7P1 496 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RBMY1A1P0DJD3 496 aaKnown RBP4.1□□□□□ -1.75
VPS13D-213ENST00000613099 RBMY1CP0DJD4 496 aa4.1□□□□□ -1.75
VPS13D-213ENST00000613099 IGFBP6P24592 240 aaPredicted RBP4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms