RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 TSSC4Q9Y5U2 329 aaPredicted RBP18.48■□□□□ 0.55
ATPAF1-213ENST00000574428 WI2-2373I1.2A0A1W2PRP0 233 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 OR5G3P0C626 314 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 PATE2Q6UY27 113 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 SCRT1Q9BWW7 348 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 SCO1O75880 301 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 ADCYAP1P18509 176 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 USF2Q15853 346 aaPredicted RBP18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 AWAT1Q58HT5 328 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 C8orf86Q6ZUL3 223 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 UHRF2Q96PU4 802 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 ZFAND3Q9H8U3 227 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 SLC25A22Q9H936 323 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 DNAJC4Q9NNZ3 241 aa18.47■□□□□ 0.55
ATPAF1-213ENST00000574428 HYPMO75409 117 aa18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 PLP1P60201 277 aa18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 CCL20P78556 96 aa18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 ZNF726P1Q15940 193 aa18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 C10orf113Q5VZT2 155 aa18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 SSX7Q7RTT5 188 aa18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 SEPSECSQ9HD40 501 aaKnown RBP18.46■□□□□ 0.55
ATPAF1-213ENST00000574428 APOC3P02656 99 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 GUK1Q16774 197 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 SPATA31B1PQ5VZV4 182 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 OR1L4Q8NGR5 311 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 SFT2D1Q8WV19 159 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 DUX3Q96PT4 197 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 PFDN5Q99471 154 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 ATRQ13535 2644 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 C9JQL5 133 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 HSPB1P04792 205 aaKnown RBP18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 UNQ9165/PRO28630Q6UXU0 137 aa18.45■□□□□ 0.54
ATPAF1-213ENST00000574428 HMGB3O15347 200 aaKnown RBP18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 RPEL1Q2QD12 228 aa18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 FAM78BQ5VT40 261 aa18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 GATAD1Q8WUU5 269 aa18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 C20orf24Q9BUV8 137 aa18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 C19orf24Q9BVV8 132 aa18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 HIGD1AQ9Y241 93 aa18.44■□□□□ 0.54
ATPAF1-213ENST00000574428 ELOA3CA0A087WX78 387 aaPredicted RBP18.43■□□□□ 0.54
ATPAF1-213ENST00000574428 NDUFA4O00483 81 aa18.43■□□□□ 0.54
ATPAF1-213ENST00000574428 CDC34P49427 236 aaPredicted RBP18.43■□□□□ 0.54
ATPAF1-213ENST00000574428 MORN5Q5VZ52 161 aa18.43■□□□□ 0.54
ATPAF1-213ENST00000574428 OR11H1Q8NG94 326 aa18.43■□□□□ 0.54
ATPAF1-213ENST00000574428 ACTR3CQ9C0K3 210 aaPredicted RBP18.43■□□□□ 0.54
ATPAF1-213ENST00000574428 A0A1W2PPV4 95 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 SEC14L6B5MCN3 397 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 ZNF207O43670 478 aaKnown RBP18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 HBE1P02100 147 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 HOXD3P31249 432 aaPredicted RBP18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 RHOBP62745 196 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 C10orf91Q5T1B1 145 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 MIR17HGQ75NE6 70 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 LINC00305Q7Z4B0 112 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 OR1N2Q8NGR9 330 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 RAB24Q969Q5 203 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 EIF5A2Q9GZV4 153 aaKnown RBP18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 MRPL27Q9P0M9 148 aaKnown RBP18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 TRAV1-1A0A0B4J248 108 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 ZNF320A2RRD8 509 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 ADARB2-AS1A8MUL3 147 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 F8W036 122 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 SFTA3P0C7M3 94 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 NSUN5P1Q3KNT7 163 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 FUT9Q9Y231 359 aa18.42■□□□□ 0.54
ATPAF1-213ENST00000574428 TENM1Q9UKZ4 2725 aa18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 PEA15Q15121 130 aa18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 LCN15Q6UWW0 184 aa18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 MBD3L1Q8WWY6 194 aa18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 TMEM190Q8WZ59 177 aa18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 RAX2Q96IS3 184 aa18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 FBN1P35555 2871 aaKnown RBP18.41■□□□□ 0.54
ATPAF1-213ENST00000574428 CTXND1A0A1B0GTU2 59 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 LINC01619G3V211 115 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 SLURP1P55000 103 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 GPHB5Q86YW7 130 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 DPF1Q92782 380 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 SEC11CQ9BY50 192 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 SLC25A39Q9BZJ4 359 aaPredicted RBP18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 RABAC1Q9UI14 185 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 CARHSP1Q9Y2V2 147 aaKnown RBP18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 TRAV5A0A0B4J249 113 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 FAM106AQ4KMX7 169 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 LEMD1Q68G75 181 aa18.4■□□□□ 0.54
ATPAF1-213ENST00000574428 FGF8P55075 233 aaPredicted RBP18.39■□□□□ 0.53
ATPAF1-213ENST00000574428 SYNJ2BPP57105 145 aa18.39■□□□□ 0.53
ATPAF1-213ENST00000574428 RARRES2Q99969 163 aa18.39■□□□□ 0.53
ATPAF1-213ENST00000574428 MRPL32Q9BYC8 188 aaKnown RBP18.39■□□□□ 0.53
ATPAF1-213ENST00000574428 MAP1LC3B2A6NCE7 125 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 RBFOX3A6NFN3 312 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 PPT1P50897 306 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 GUCA2BQ16661 112 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 ATRAIDQ6UW56 229 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 NDUFA11Q86Y39 141 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 RNF2Q99496 336 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 MAP1LC3BQ9GZQ8 125 aa18.38■□□□□ 0.53
ATPAF1-213ENST00000574428 H3BRN7 92 aa18.37■□□□□ 0.53
ATPAF1-213ENST00000574428 METTL26Q96S19 204 aa18.37■□□□□ 0.53
ATPAF1-213ENST00000574428 SHANK2-AS3Q9BTD1 123 aa18.37■□□□□ 0.53
ATPAF1-213ENST00000574428 IGHV3-49A0A0A0MS15 119 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms