RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 OTOGLQ3ZCN5 2332 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 A0A1B0GXF2 115 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 H0Y8G0 127 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 OR2J3O76001 311 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 ZNF138P52744 262 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 HBBP68871 147 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 GPR82Q96P67 336 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 ZZEF1O43149 2961 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 ZADH2Q8N4Q0 377 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 RPP21Q9H633 154 aaKnown RBP10.59□□□□□ -0.71
CLN3-210ENST00000563874 ZNF835Q9Y2P0 537 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 SPTBN2O15020 2390 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 IGHV2-26A0A0B4J1V2 119 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 NHLH1Q02575 133 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 THAP8Q8NA92 274 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 OR4F17Q8NGA8 305 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 VSTM2AQ8TAG5 236 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 PERPQ96FX8 193 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 ASCL2Q99929 193 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 TMEM70Q9BUB7 260 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 hDV102S1A0JD36 115 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 B9A039 149 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 P01737 135 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 FTH1P19P0C7X4 201 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 WFDC8Q8IUA0 241 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 WASHC3Q9Y3C0 194 aa10.59□□□□□ -0.71
CLN3-210ENST00000563874 MRPS16Q9Y3D3 137 aaKnown RBP10.59□□□□□ -0.71
CLN3-210ENST00000563874 CSMD1Q96PZ7 3565 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 OR4C46A6NHA9 309 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 CNTFRP26992 372 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 CA7P43166 264 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 FAM120AOSQ5T036 256 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 CHRDL1Q9BU40 450 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 CSTL1Q9H114 145 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 TMEM30BQ3MIR4 351 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 MLST8Q9BVC4 326 aa10.58□□□□□ -0.72
CLN3-210ENST00000563874 IGHV1-24A0A0C4DH33 117 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 TNFRSF1AP19438 455 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 ORAOV1Q8WV07 137 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 Q9H3A6 140 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 COX11Q9Y6N1 276 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 ANKRD11Q6UB99 2663 aaPredicted RBP10.57□□□□□ -0.72
CLN3-210ENST00000563874 K7EM74 188 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 ATP5L2Q7Z4Y8 100 aa10.57□□□□□ -0.72
CLN3-210ENST00000563874 CIARTQ8N365 385 aaPredicted RBP10.57□□□□□ -0.72
CLN3-210ENST00000563874 DAZAP1Q96EP5 407 aaKnown RBP10.57□□□□□ -0.72
CLN3-210ENST00000563874 IGLC7A0M8Q6 106 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 C17orf100A8MU93 164 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 A8MWL6 223 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 INS-IGF2F8WCM5 200 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 CSN3P07498 182 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 MEF2CQ06413 473 aaPredicted RBP10.56□□□□□ -0.72
CLN3-210ENST00000563874 ADIPOQQ15848 244 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 MRGPRG-AS1Q2M3A8 158 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 VMA21Q3ZAQ7 101 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 PMCHL2Q9BQD1 86 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 KLF12Q9Y4X4 402 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 ACACAQ13085 2346 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 AKAP13Q12802 2813 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 PPIAL4EA0A075B759 164 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 PPIAL4DF5H284 164 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 TCRAP04437 139 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 PPIAL4FP0DN26 164 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 MPV17L2Q567V2 206 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 ZNF738Q8NE65 137 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 TMEM186Q96B77 213 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 CTSZQ9UBR2 303 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 RIF1Q5UIP0 2472 aaKnown RBP10.56□□□□□ -0.72
CLN3-210ENST00000563874 LEPROTL1O95214 131 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 GP9P14770 177 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 EXOC3-AS1Q8N2X6 119 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 STXBP6Q8NFX7 210 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 PRSS22Q9GZN4 317 aa10.56□□□□□ -0.72
CLN3-210ENST00000563874 NDUFB3O43676 98 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 LYZP61626 148 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 MUC15Q8N387 334 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 C5orf17Q8NAS9 161 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 OR4A5Q8NH83 315 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 ZGRF1Q86YA3 2104 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 SYS1-DBNDD2H3BUS1 97 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 CHEK1O14757 476 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 TOMM40O96008 361 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 LTAP01374 205 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 COL8A1P27658 744 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 PRNTQ86SH4 94 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 ZNF318Q5VUA4 2279 aa10.55□□□□□ -0.72
CLN3-210ENST00000563874 C19orf71A6NCJ1 209 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 BSPH1Q075Z2 132 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 UBE2V1Q13404 147 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 IGHV1-69-2A0A0G2JMI3 117 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 TMEM178BH3BS89 294 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 LRRC10Q5BKY1 277 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 SHISA2Q6UWI4 295 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 RBPMS2Q6ZRY4 209 aaKnown RBP10.54□□□□□ -0.72
CLN3-210ENST00000563874 GOLT1AQ6ZVE7 132 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 FMC1Q96HJ9 113 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 MALRD1Q5VYJ5 2156 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 APC2O95996 2303 aa10.54□□□□□ -0.72
CLN3-210ENST00000563874 RPL27AP46776 148 aaKnown RBP10.54□□□□□ -0.72
CLN3-210ENST00000563874 C3orf36Q3SXR2 165 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms