RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 POLEQ07864 2286 aa4.34□□□□□ -1.71
LIMA1-212ENST00000552491 TRAV8-1A0A0A6YYK1 113 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 TRAV17A0A0B4J275 112 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 C19orf71A6NCJ1 209 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 MBD3L4A6NDZ8 208 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 MBD3L3A6NE82 208 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 OR4C46A6NHA9 309 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 MBD3L5A6NJ08 208 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 ZNF785A8K8V0 405 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 FAM87AP0C7U9 286 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 C3orf36Q3SXR2 165 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 MPV17L2Q567V2 206 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 CT83Q5H943 113 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 HCP5Q6MZN7 132 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 PDPNQ86YL7 162 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 RBMXL3Q8N7X1 1067 aaKnown RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 OR1B1Q8NGR6 318 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 MBD3L2Q8NHZ7 208 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 VSTM2AQ8TAG5 236 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 CHCHD1Q96BP2 118 aaKnown RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 ASCL2Q99929 193 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 GAL3ST2Q9H3Q3 398 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 ST20Q9HBF5 79 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 FAM215AQ9Y5M1 114 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 SOX21Q9Y651 276 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-212ENST00000552491 LINC00312Q9Y6C7 94 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 ZNF318Q5VUA4 2279 aa4.34□□□□□ -1.72
LIMA1-212ENST00000552491 IGHV2-70DA0A0C4DH43 119 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 A8MWL6 223 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 SYS1-DBNDD2H3BUS1 97 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 SLC25A17O43808 307 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 DLX1P56177 255 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 PRB3Q04118 309 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-212ENST00000552491 FAM27E3Q08E93 113 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 FBLN7Q53RD9 439 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 TEX36Q5VZQ5 186 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM200BQ69YZ2 307 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 OR4C13Q8NGP0 309 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 PERPQ96FX8 193 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 LOXL4Q96JB6 756 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 KRTAP4-7Q9BYR0 210 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 RPP21Q9H633 154 aaKnown RBP4.33□□□□□ -1.72
LIMA1-212ENST00000552491 ZGRF1Q86YA3 2104 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 IGHV3-72A0A0B4J1Y9 119 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 FAM231BA6NCW3 169 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 M0R296 226 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 TAX1BP3O14907 124 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 APOHP02749 345 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-212ENST00000552491 NBEAP1P0C6P0 100 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 GP9P14770 177 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 CNTFRP26992 372 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 MEF2CQ06413 473 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-212ENST00000552491 LRRC10Q5BKY1 277 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 LYPD2Q6UXB3 125 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 CIARTQ8N365 385 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-212ENST00000552491 C22orf15Q8WYQ4 148 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 FMC1Q96HJ9 113 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 PMCHL2Q9BQD1 86 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 GFRA4Q9GZZ7 299 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 ZNF492Q9P255 531 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 ZNF835Q9Y2P0 537 aa4.33□□□□□ -1.72
LIMA1-212ENST00000552491 TRAV30A0A087WSZ9 112 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 TOX4O94842 621 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 LEPROTL1O95214 131 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 LTAP01374 205 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 P01737 135 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 TCRAP04437 139 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 CRYGCP07315 174 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 OR5AL1P0C617 328 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 ETFRF1Q6IPR1 90 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 ABHD17AQ96GS6 310 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 NDFIP1Q9BT67 221 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 Q9H3A6 140 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 GVINP1Q7Z2Y8 2422 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 LOC102724200A0A096LPH7 203 aaPredicted RBP4.32□□□□□ -1.72
LIMA1-212ENST00000552491 MUC21A0A0G2JKD1 596 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 MUC21A0A140T8X8 626 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 OR2T8A6NH00 312 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 NUDT3O95989 172 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 IGLV2-11P01706 119 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 CD40P25942 277 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 CDKN1BP46527 198 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 DEFB109BQ30KR1 87 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 ANKRD39Q53RE8 183 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 MUC21Q5SSG8 566 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 BVES-AS1Q5T3Y7 98 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 FAM71F2Q6NXP2 309 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 SLC25A34Q6PIV7 304 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 RBPMS2Q6ZRY4 209 aaKnown RBP4.32□□□□□ -1.72
LIMA1-212ENST00000552491 EXOC3-AS1Q8N2X6 119 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 C5orf17Q8NAS9 161 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 OR4C5Q8NGB2 326 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 OR10X1Q8NGY0 326 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM186Q96B77 213 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 DAZAP1Q96EP5 407 aaKnown RBP4.32□□□□□ -1.72
LIMA1-212ENST00000552491 ZC2HC1AQ96GY0 325 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 WASHC3Q9Y3C0 194 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 OTOGLQ3ZCN5 2332 aa4.32□□□□□ -1.72
LIMA1-212ENST00000552491 RELNP78509 3460 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 NPIPB6E9PJ23 425 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms