RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SMDT1Q9H4I9 107 aa16.27■□□□□ 0.19
VPS28-208ENST00000527797 MANBALQ9NQG1 85 aa16.27■□□□□ 0.19
VPS28-208ENST00000527797 PPP5D1E7EU14 171 aa16.26■□□□□ 0.19
VPS28-208ENST00000527797 OR7C2O60412 319 aa16.26■□□□□ 0.19
VPS28-208ENST00000527797 FAM209BQ5JX69 171 aa16.26■□□□□ 0.19
VPS28-208ENST00000527797 FAM167A-AS1Q96KT0 104 aa16.26■□□□□ 0.19
VPS28-208ENST00000527797 SLC25A39Q9BZJ4 359 aaPredicted RBP16.26■□□□□ 0.19
VPS28-208ENST00000527797 FLNBO75369 2602 aaKnown RBP16.25■□□□□ 0.19
VPS28-208ENST00000527797 IGHV3-35A0A0C4DH35 117 aa16.25■□□□□ 0.19
VPS28-208ENST00000527797 ANKRD34BA5PLL1 514 aa16.25■□□□□ 0.19
VPS28-208ENST00000527797 CRLF1O75462 422 aa16.25■□□□□ 0.19
VPS28-208ENST00000527797 TAGLN2P37802 199 aaKnown RBP16.25■□□□□ 0.19
VPS28-208ENST00000527797 KIAA0141Q14154 515 aaPredicted RBP16.25■□□□□ 0.19
VPS28-208ENST00000527797 ICAM4Q14773 271 aa16.25■□□□□ 0.19
VPS28-208ENST00000527797 USF2Q15853 346 aaPredicted RBP16.25■□□□□ 0.19
VPS28-208ENST00000527797 RXFP4Q8TDU9 374 aa16.25■□□□□ 0.19
VPS28-208ENST00000527797 VAX2Q9UIW0 290 aa16.25■□□□□ 0.19
VPS28-208ENST00000527797 TMEM218A2RU14 115 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 KRBOX1C9JBD0 128 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 BMPR1BO00238 502 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 RPLP1P05386 114 aaKnown RBP16.24■□□□□ 0.19
VPS28-208ENST00000527797 TOMM20LQ6UXN7 152 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 KLHDC1Q8N7A1 406 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 RNF152Q8N8N0 203 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 STXBP6Q8NFX7 210 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 ZNF503Q96F45 646 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 TMEM167BQ9NRX6 74 aa16.24■□□□□ 0.19
VPS28-208ENST00000527797 C9JQL5 133 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 MYOZ3Q8TDC0 251 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 ZNF414Q96IQ9 312 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 SHANK2-AS3Q9BTD1 123 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 OR51M1Q9H341 326 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 C16orf95Q9H693 158 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 H3BRN7 92 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 PAGE4O60829 102 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 TRBV12-3P01733 135 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 S100A7P31151 101 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 PAXXQ9BUH6 204 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 PEF1Q9UBV8 284 aaKnown RBP16.23■□□□□ 0.19
VPS28-208ENST00000527797 RABAC1Q9UI14 185 aa16.23■□□□□ 0.19
VPS28-208ENST00000527797 TCF21O43680 179 aa16.22■□□□□ 0.19
VPS28-208ENST00000527797 HSPB1P04792 205 aaKnown RBP16.22■□□□□ 0.19
VPS28-208ENST00000527797 LINC00052Q96N35 136 aa16.22■□□□□ 0.19
VPS28-208ENST00000527797 OR5B12Q96R08 314 aa16.22■□□□□ 0.19
VPS28-208ENST00000527797 ZFAND3Q9H8U3 227 aa16.22■□□□□ 0.19
VPS28-208ENST00000527797 OR10J4P0C629 311 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 ZP3P21754 424 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 UBE2G2P60604 165 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 UBE2L3P68036 154 aaKnown RBP16.21■□□□□ 0.19
VPS28-208ENST00000527797 LEMD1Q68G75 181 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 UBE2E2Q96LR5 201 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 SLC35B3Q9H1N7 401 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 ZFHX3Q15911 3703 aa16.21■□□□□ 0.19
VPS28-208ENST00000527797 GGCTO75223 188 aaKnown RBP16.2■□□□□ 0.18
VPS28-208ENST00000527797 SFTA3P0C7M3 94 aa16.2■□□□□ 0.18
VPS28-208ENST00000527797 RNF24Q9Y225 148 aa16.2■□□□□ 0.18
VPS28-208ENST00000527797 ZNF98A6NK75 572 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 CYSRT1A8MQ03 144 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 NDUFA4O00483 81 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 SRP19P09132 144 aaKnown RBP16.19■□□□□ 0.18
VPS28-208ENST00000527797 PYYP10082 97 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 MEF2BQ02080 365 aaPredicted RBP16.19■□□□□ 0.18
VPS28-208ENST00000527797 SUN5Q8TC36 379 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 IGHV3OR16-8A0A075B7F1 116 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 NDUFA7O95182 113 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 LGALS1P09382 135 aaKnown RBP16.19■□□□□ 0.18
VPS28-208ENST00000527797 CST9LP1Q5W188 147 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 LINC01006Q8NI28 216 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 TXNDC17Q9BRA2 123 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 TMEM14CQ9P0S9 112 aa16.19■□□□□ 0.18
VPS28-208ENST00000527797 F8W036 122 aa16.18■□□□□ 0.18
VPS28-208ENST00000527797 BPIFA4PQ86YQ2 179 aa16.18■□□□□ 0.18
VPS28-208ENST00000527797 FXYD5Q96DB9 178 aa16.18■□□□□ 0.18
VPS28-208ENST00000527797 ARL2-SNX15V9GYD0 113 aa16.18■□□□□ 0.18
VPS28-208ENST00000527797 FAM74A7A6NL05 159 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 C11orf94C9JXX5 98 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 GP9P14770 177 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 CD81P60033 236 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 OR4F5Q8NH21 305 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 OR4F4Q96R69 305 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 METTL26Q96S19 204 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 C20orf24Q9BUV8 137 aa16.17■□□□□ 0.18
VPS28-208ENST00000527797 YTHDF2Q9Y5A9 579 aaKnown RBP16.17■□□□□ 0.18
VPS28-208ENST00000527797 SEC11CQ9BY50 192 aa16.16■□□□□ 0.18
VPS28-208ENST00000527797 CLPSL1A2RUU4 121 aa16.16■□□□□ 0.18
VPS28-208ENST00000527797 NDUFS6O75380 124 aaKnown RBP16.16■□□□□ 0.18
VPS28-208ENST00000527797 NPPCP23582 126 aa16.16■□□□□ 0.18
VPS28-208ENST00000527797 CDX1P47902 265 aaPredicted RBP16.16■□□□□ 0.18
VPS28-208ENST00000527797 WIPF2Q8TF74 440 aaPredicted RBP16.16■□□□□ 0.18
VPS28-208ENST00000527797 HIVEP1P15822 2718 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 A0A1W2PRE2 83 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 NBEAP1P0C6P0 100 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 HIST1H1EP10412 219 aaKnown RBP16.15■□□□□ 0.18
VPS28-208ENST00000527797 ADCYAP1P18509 176 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 ATP5G3P48201 142 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 CEBPGP53567 150 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 TCTEX1D4Q5JR98 221 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 CYB561D1Q8N8Q1 229 aa16.15■□□□□ 0.18
VPS28-208ENST00000527797 ANK3Q12955 4377 aaKnown RBP16.14■□□□□ 0.17
VPS28-208ENST00000527797 PDE6DO43924 150 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms