RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 DCHS2Q6V1P9 2916 aa6.1□□□□□ -1.43
HDAC3-216ENST00000523088 F8P00451 2351 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 MED13LQ71F56 2210 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 A0A0G2JNJ9 132 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 C3orf85A0A1B0GTC6 90 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 M0R1B8 84 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 RRHO14718 337 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 LMX1BO60663 402 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 WISP2O76076 250 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 CLPSP04118 112 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 OR5AL1P0C617 328 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 FBXW4P57775 412 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 PPP1CBP62140 327 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 ZNF85Q03923 595 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 PSMG4Q5JS54 123 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 C9orf153Q5TBE3 101 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 SAMD5Q5TGI4 173 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 ACP7Q6ZNF0 438 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 DGAT2L6Q6ZPD8 337 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 TMEM256Q8N2U0 113 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 EXOC3-AS1Q8N2X6 119 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 CYB561D1Q8N8Q1 229 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 ZPLD1Q8TCW7 415 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 TMEM171Q8WVE6 324 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 RNASE6Q93091 150 aaKnown RBP6.09□□□□□ -1.43
HDAC3-216ENST00000523088 MRPL24Q96A35 216 aaKnown RBP6.09□□□□□ -1.43
HDAC3-216ENST00000523088 C20orf78Q9BR46 151 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 NAA60Q9H7X0 242 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 NRN1Q9NPD7 142 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 SPRR3Q9UBC9 169 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 Q9UF83 564 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 Q9UFV3 132 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 TRAPPC1Q9Y5R8 145 aa6.09□□□□□ -1.43
HDAC3-216ENST00000523088 CSMD2Q7Z408 3487 aa6.09□□□□□ -1.44
HDAC3-216ENST00000523088 MED12LQ86YW9 2145 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 MPDZO75970 2070 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 TRAV1-2A0A0B4J238 106 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 TRAV1-1A0A0B4J248 108 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 LOC107986453A0A1B0GWG9 222 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 ZAR1LA6NP61 321 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 C19orf84I3L1E1 186 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 APOMO95445 188 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 RFPL3SP0C7P2 107 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 IGLL1P15814 213 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 CRYGSP22914 178 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 GALR1P47211 349 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 KRTDAPP60985 99 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 CDSNQ15517 529 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 ZNF718Q3SXZ3 478 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 GAGE13Q4V321 117 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 TCF23Q7RTU1 214 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 OR2AJ1Q8NGZ0 328 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 CNRIP1Q96F85 164 aaPredicted RBP6.08□□□□□ -1.44
HDAC3-216ENST00000523088 SLC25A44Q96H78 314 aaPredicted RBP6.08□□□□□ -1.44
HDAC3-216ENST00000523088 PRELID3AQ96N28 172 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 S1PR3Q99500 378 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 TMEM59Q9BXS4 323 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 MRPL20Q9BYC9 149 aaKnown RBP6.08□□□□□ -1.44
HDAC3-216ENST00000523088 PLEKHF2Q9H8W4 249 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 PROK2Q9HC23 129 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 SLAMF8Q9P0V8 285 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 PYGO1Q9Y3Y4 419 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 SPG11Q96JI7 2443 aa6.08□□□□□ -1.44
HDAC3-216ENST00000523088 TACC2O95359 2948 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 FBN2P35556 2912 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 OTOGQ6ZRI0 2925 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 NDUFC2-KCTD14E9PQ53 114 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 M0QYG6 137 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 SPINT2O43291 252 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 PFN2P35080 140 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 FOXA3P55318 350 aaPredicted RBP6.07□□□□□ -1.44
HDAC3-216ENST00000523088 DSCR4P56555 118 aaPredicted RBP6.07□□□□□ -1.44
HDAC3-216ENST00000523088 Q56UQ5 140 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 GAGE2AQ6NT46 116 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 ZNF550Q7Z398 422 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 SPATA12Q7Z6I5 190 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 MRPL55Q7Z7F7 128 aaKnown RBP6.07□□□□□ -1.44
HDAC3-216ENST00000523088 SGMS2Q8NHU3 365 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 GTSF1Q8WW33 167 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 PGLYRP3Q96LB9 341 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 SCGB3A2Q96PL1 93 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 AMELYQ99218 206 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 RNF126Q9BV68 326 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 TVP23BQ9NYZ1 205 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 FZR1Q9UM11 496 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 OR2W1Q9Y3N9 320 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 C2CD3Q4AC94 2353 aa6.07□□□□□ -1.44
HDAC3-216ENST00000523088 ABCA4P78363 2273 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 PDZD2O15018 2839 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 A0A1B0GTL3 188 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 ZNF732B4DXR9 585 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 PGLYRP1O75594 196 aaPredicted RBP6.06□□□□□ -1.44
HDAC3-216ENST00000523088 ZNF688P0C7X2 276 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 C3orf79P0CE67 100 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 SMIM13P0DJ93 91 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 CRISP2P16562 243 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 EDNRAP25101 427 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 NCBP2P52298 156 aaKnown RBP eCLIP6.06□□□□□ -1.441e-7■□□□□ 8.9
HDAC3-216ENST00000523088 EBI3Q14213 229 aa6.06□□□□□ -1.44
HDAC3-216ENST00000523088 NNATQ16517 81 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms