RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 POLDIP2Q9Y2S7 368 aa5.86□□□□□ -1.47
LIMCH1-207ENST00000508466 GPR179Q6PRD1 2367 aa5.86□□□□□ -1.47
LIMCH1-207ENST00000508466 PSMB2P49721 201 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 ATP5J2P56134 94 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 ERVK-16P61578 105 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PAXXQ9BUH6 204 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 SLC25A2Q9BXI2 301 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 MS4A6AQ9H2W1 248 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 MRPL36Q9P0J6 103 aaKnown RBP5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PTPRSQ13332 1948 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 EXPH5Q8NEV8 1989 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 A0A096LNJ9 63 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 IGLL5B9A064 214 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PRSS46E5RG02 174 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 E7EUB6 86 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 J3QR89 54 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 C8orf88P0DMB2 117 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 TMEM164Q5U3C3 297 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 ZNF329Q86UD4 541 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 ZNRF1Q8ND25 227 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 COQ2Q96H96 371 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 ZNF414Q96IQ9 312 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 TMEM167BQ9NRX6 74 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 TCRBV4S1A1TA0A5B7 111 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 COX7A2P2O60397 106 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 SCRG1O75711 98 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 IGKV1-16P04430 117 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 SMIM17P0DL12 118 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 GATA1P15976 413 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PRR20EP86478 221 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PRR20CP86479 221 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PRR20DP86480 221 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PRR20BP86481 221 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 PRR20AP86496 221 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 TMEM249Q2WGJ8 235 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 S1PR3Q99500 378 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 CHAC1Q9BUX1 264 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 RPP21Q9H633 154 aaKnown RBP5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 LRBAP50851 2863 aa5.85□□□□□ -1.47
LIMCH1-207ENST00000508466 COL12A1Q99715 3063 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 PTPRBP23467 1997 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 DUTP33316 252 aaKnown RBP5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 DSCR4P56555 118 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 RAC3P60763 192 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 FOXI2Q6ZQN5 318 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 DEFB108BQ8NET1 73 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 A0A1B0GXF2 115 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 KLRC4-KLRK1H3BQV0 150 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 OR2J3O76001 311 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 MAGEA5P43359 124 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 YPEL5P62699 121 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 HCP5Q6MZN7 132 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 Q6ZSR3 168 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 OR1L4Q8NGR5 311 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 AJUBAQ96IF1 538 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 FAM167A-AS1Q96KT0 104 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 FER1L6-AS2Q96M78 137 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 HIST1H4GQ99525 98 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 TXNDC17Q9BRA2 123 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 TM2D2Q9BX73 214 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 HES7Q9BYE0 225 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 KLK15Q9H2R5 256 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 SIGLEC8Q9NYZ4 499 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 CYSLTR1Q9Y271 337 aa5.84□□□□□ -1.47
LIMCH1-207ENST00000508466 PTPRZ1P23471 2315 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 TRBV25-1A0A075B6N4 114 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 IGHV1OR21-1A0A087WYE8 117 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 H7C2G1 150 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 NDUFA3O95167 84 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 LIFP15018 202 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 SUMO3P55854 103 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 RPL32P62910 135 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 ZNF766Q5HY98 468 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 DUX4L9Q6RFH8 374 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 PATE2Q6UY27 113 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 Q6ZUT4 128 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 GOLT1AQ6ZVE7 132 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 LINC00305Q7Z4B0 112 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 OR5AN1Q8NGI8 311 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 CHCHD1Q96BP2 118 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 C17orf77Q96MU5 243 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 SPATA25Q9BR10 227 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 CTSZQ9UBR2 303 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 SRRM4A7MD48 611 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 SPRY2O43597 315 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 TSPAN13O95857 204 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 COX19Q49B96 90 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 TAAR6Q96RI8 345 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 PPDPFQ9H3Y8 114 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 MSRB1Q9NZV6 116 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 RPUSD1Q9UJJ7 312 aaKnown RBP5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 JPT1Q9UK76 154 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 LY96Q9Y6Y9 160 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 S4R3C0 116 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 NBASA2RRP1 2371 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 TRAV40A0A0B4J280 105 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 PINLYPA6NC86 204 aa5.83□□□□□ -1.48
LIMCH1-207ENST00000508466 CRLF1O75462 422 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms