RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 MYCNOSP40205 109 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 FAM231DQ6ZW35 169 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 VN1R17PQ8TDU5 208 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SSBP3Q9BWW4 388 aaPredicted RBP12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 A0A1W2PS18 150 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 C22orf46C9J442 243 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 HLA-DQA1P01909 254 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 TMEM155Q4W5P6 130 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 PVRIGQ6DKI7 326 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 SIGLECL1Q8N7X8 197 aa12.9□□□□□ -0.34
MSH5-SAPCD1-208ENST00000498473 CRYGCP07315 174 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 SRIP30626 198 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 MFAP2P55001 183 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 LHFPL4Q7Z7J7 247 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ZNF738Q8NE65 137 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 RNASE6Q93091 150 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 FAM103A1Q9BTL3 118 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 IGHV2-70DA0A0C4DH43 119 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 IGLC7A0M8Q6 106 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 PLAUP00749 431 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 RBPJQ06330 500 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 VMA21Q3ZAQ7 101 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ZNF841Q6ZN19 808 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 LINC00305Q7Z4B0 112 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 KCNS1Q96KK3 526 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 C7orf69Q9H7B7 122 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 KAAG1Q9UBP8 84 aa12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TBL2Q9Y4P3 447 aaKnown RBP12.89□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ASH1LQ9NR48 2969 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ZNF253O75346 499 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 IGHV1-8P0DP01 117 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 WIPF2Q8TF74 440 aaPredicted RBP12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 SMIM12Q96EX1 92 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 NRN1Q9NPD7 142 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 PKDREJQ9NTG1 2253 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ANKHD1Q8IWZ3 2542 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 IGHV3-72A0A0B4J1Y9 119 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 FAM90A27PA6NNH2 459 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 GRNP28799 593 aaKnown RBP12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 MC5RP33032 325 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 GNG5P63218 68 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 SLAQ13239 276 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 GDF5OSQ5U4N7 250 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 OR4C5Q8NGB2 326 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 GRAMD2BQ96HH9 432 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 VAMP8Q9BV40 100 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 PAM16Q9Y3D7 125 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 COX11Q9Y6N1 276 aa12.88□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 MOSP00540 346 aa12.87□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 APCSP02743 223 aa12.87□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 NBEAP1P0C6P0 100 aa12.87□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 HCP5Q6MZN7 132 aa12.87□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 C19orf35Q6ZS72 473 aa12.87□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 DOPEY2Q9Y3R5 2298 aa12.87□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 SHISA9B4DS77 424 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 E7EQL1 145 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 CRYGBP07316 175 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 CA7P43166 264 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 LGALS7P47929 136 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 AMTP48728 403 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 KRTDAPP60985 99 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ARF6P62330 175 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ADORA2A-AS1P86434 159 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 STPG4Q8N801 248 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 NUP35Q8NFH5 326 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ZNF331Q9NQX6 463 aaPredicted RBP12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TNFRSF19Q9NS68 423 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ENSAO43768 121 aaKnown RBP12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 CNTFRP26992 372 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 CFAP161Q6P656 301 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 RASL11AQ6T310 242 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 NIT1Q86X76 327 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TMEM133Q9H2Q1 129 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ZNF586Q9NXT0 402 aa12.86□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TRAV30A0A087WSZ9 112 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 CORTO00230 105 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ZNF324O75467 553 aaPredicted RBP12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 ORM2P19652 201 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 PMCHP20382 165 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 DLX1P56177 255 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 FBLN7Q53RD9 439 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TEX45Q8NA69 505 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TSKUQ8WUA8 353 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 EPDR1Q9UM22 224 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 DOPEY1Q5JWR5 2465 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 VWC2LB2RUY7 222 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 DIRC3C9JPN6 131 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 OCIAD2Q56VL3 154 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 OR1B1Q8NGR6 318 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 C18orf32Q8TCD1 76 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 PERPQ96FX8 193 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TRGV9Q99603 122 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 KLF12Q9Y4X4 402 aa12.85□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 USP9YO00507 2555 aaPredicted RBP12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 MMDQ15546 238 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 CTRLP40313 264 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 PRR27Q6MZM9 219 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 FAM19A2Q8N3H0 131 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 TMEM116Q8NCL8 245 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 OR4B1Q8NGF8 309 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms