RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF414Q96IQ9 312 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 PMCHL2Q9BQD1 86 aa4.32□□□□□ -1.72
SYNE1-220ENST00000471834 MCRIP2Q9BUT9 160 aaKnown RBP4.32□□□□□ -1.72
SYNE1-220ENST00000471834 GOLGA4Q13439 2230 aaKnown RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 AHRRA9YTQ3 701 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 H3BTX0 84 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 MRPS12O15235 138 aaKnown RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 LTAP01374 205 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 FBLN7Q53RD9 439 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 SPANXN1Q5VSR9 72 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 OR5AN1Q8NGI8 311 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 OR1N2Q8NGR9 330 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 RAX2Q96IS3 184 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 S4R3C0 116 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 PHF3Q92576 2039 aaKnown RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 A0A1B0GV72 72 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 M0R3E3 92 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 IGKV3-20P01619 116 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 IGFL2Q6UWQ7 119 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 TCF23Q7RTU1 214 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 MDS2Q8NDY4 140 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 STXBP6Q8NFX7 210 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 OR10AG1Q8NH19 301 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 CST9LQ9H4G1 147 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF407Q9C0G0 2248 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 CACNA1BQ00975 2339 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 DNAH12Q6ZR08 3092 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 TCRBV4S1A1TA0A5B7 111 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 HINT1P49773 126 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 HERVK_113P61574 105 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 OR2T8A6NH00 312 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 MGST3O14880 152 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 GP9P14770 177 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 HIST1H1AQ02539 215 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 SRSF9Q13242 221 aaKnown RBP eCLIP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 SLC25A48Q6ZT89 311 aaKnown RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 HIST1H1EP10412 219 aaKnown RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 FAM53AQ6NSI3 398 aaPredicted RBP4.31□□□□□ -1.72
SYNE1-220ENST00000471834 BPIFA4PQ86YQ2 179 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 ITLN1Q8WWA0 313 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM70Q9BUB7 260 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 SSTR5P35346 364 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 SELENOKQ9Y6D0 94 aa4.31□□□□□ -1.72
SYNE1-220ENST00000471834 CENPVL3A0A0U1RRI6 287 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 FBLL1A6NHQ2 334 aaKnown RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 SYS1-DBNDD2H3BUS1 97 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 RNASE2P10153 161 aaKnown RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 FCGR2BP31994 310 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 LGALS9BQ3B8N2 356 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 LGALS9CQ6DKI2 356 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 UNQ5815/PRO19632Q6UWF5 114 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 Q6ZR03 302 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 OSR1Q8TAX0 266 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 DUX5Q96PT3 197 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 IGHV4-4A0A075B6R2 117 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 SMAGPQ0VAQ4 97 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 GCSAMLQ5JQS6 135 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 Q6AWC8 147 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 C1orf229Q6ZS94 237 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 TNFRSF14Q92956 283 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 GPR82Q96P67 336 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 RPUSD1Q9UJJ7 312 aaKnown RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 CCL8P80075 99 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 RPL24P83731 157 aaKnown RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 Q0VFX4 171 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 CD177Q8N6Q3 437 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 NCKAP5O14513 1909 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 FCN3O75636 299 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 DLX6P56179 175 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 GCSAMQ8N6F7 178 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF502Q8TBZ5 544 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 GTSF1Q8WW33 167 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 METTL26Q96S19 204 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 ASXL3Q9C0F0 2248 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 C8orf88P0DMB2 117 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 KIR2DL2P43627 348 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 FOXG1P55316 489 aaPredicted RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 IZUMO4Q1ZYL8 232 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 MBNL2Q5VZF2 373 aaKnown RBP4.3□□□□□ -1.72
SYNE1-220ENST00000471834 DGAT2L7PQ6IED9 249 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM251Q8N6I4 163 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 OR10J6PQ8NGY7 276 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 KLK15Q9H2R5 256 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 PRO3102Q9H379 93 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 NDUFA4L2Q9NRX3 87 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 SPTBP11277 2137 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 PGPEP1LA6NFU8 196 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 CORTO00230 105 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 TM4SF20Q53R12 229 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 MRAPQ8TCY5 172 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 AHCTF1Q8WYP5 2266 aa4.3□□□□□ -1.72
SYNE1-220ENST00000471834 YLPM1P49750 1951 aaKnown RBP4.29□□□□□ -1.72
SYNE1-220ENST00000471834 A6NJY4 79 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 A6NNC1 897 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 TAL2Q16559 108 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 CDCP2Q5VXM1 449 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 CALYQ9NYX4 217 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PRNDQ9UKY0 176 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 TFF1P04155 84 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 CELA3BP08861 270 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms