RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 LYPD3O95274 346 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 JPT2Q9H910 190 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 ST20Q9HBF5 79 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 TRBV7-9A0A0J9YWB2 115 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 CD28P10747 220 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 CLLU1Q5K131 121 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 CACNG8Q8WXS5 425 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 ISOC2Q96AB3 205 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 FBLL1A6NHQ2 334 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 ARL6IP6Q8N6S5 226 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 TRAV5A0A0B4J249 113 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 IFI27P40305 119 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 ZNF497Q6ZNH5 498 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 SSBP2P81877 361 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 GPHB5Q86YW7 130 aa7.45□□□□□ -1.22
LIMCH1-202ENST00000381753 BCL6BQ8N143 479 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 Q8TCH9 128 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 IER3P46695 156 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 SPINK13Q1W4C9 94 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 TMEM170BQ5T4T1 132 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 TMEM250H0YL14 139 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 PSG3Q16557 428 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 ZNF680Q8NEM1 530 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 SDK2Q58EX2 2172 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 MUC21A0A0G2JKD1 596 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 CENPVL3A0A0U1RRI6 287 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 MUC21A0A140T8X8 626 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 FGF9P31371 208 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 C10orf55Q5SWW7 151 aa7.44□□□□□ -1.22
LIMCH1-202ENST00000381753 PTPN13Q12923 2485 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 LOC107984156A0A0G2JMH3 177 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 FAM74A7A6NL05 159 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 FABP5P3A8MUU1 101 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 ZNF562Q6V9R5 426 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 ARL17AQ8IVW1 177 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 TANC1Q9C0D5 1861 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 IGFBP2P18065 325 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 ERCC8Q13216 396 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 WIPF2Q8TF74 440 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 LINC00862A6NCI5 91 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 H0YJW9 148 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 TSPAN13O95857 204 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 FOLR2P14207 255 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 DPPA3Q6W0C5 159 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 Q6ZWC4 215 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 IGKV1D-17A0A075B6S4 117 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 INS-IGF2F8WCM5 200 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 DEFB4AO15263 64 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 LINC00158P58513 81 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 C6orf226Q5I0X4 101 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 TTC32Q5I0X7 151 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 OR10D4PQ8NGN7 298 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 PHYHIPLQ96FC7 376 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 LYZL4Q96KX0 146 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 MRPL13Q9BYD1 178 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 VCX2Q9H322 139 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 NPDC1Q9NQX5 325 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 IGHV2-70P01814 119 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 ANGP03950 147 aaKnown RBP7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 H1FOOQ8IZA3 346 aaPredicted RBP7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 THAP8Q8NA92 274 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 AICDAQ9GZX7 198 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 U3KQK5 164 aa7.43□□□□□ -1.22
LIMCH1-202ENST00000381753 Q9H3A6 140 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 CADP27708 2225 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 CD55P08174 381 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 AURKAIP1Q9NWT8 199 aaPredicted RBP7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 TCTAP57738 103 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 IBA57Q5T440 356 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 CYB561D1Q8N8Q1 229 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 TMEM126AQ9H061 195 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 PIEZO1Q92508 2521 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 PCNX2A6NKB5 2137 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 MRPL23Q16540 153 aaKnown RBP7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 FAM110AQ9BQ89 295 aa7.42□□□□□ -1.22
LIMCH1-202ENST00000381753 ARID1AO14497 2285 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 IGHV3-16A0A0C4DH30 117 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 C1orf159Q96HA4 380 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 LINC00477Q96M19 166 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 OR5AC2Q9NZP5 309 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 RALGAPA2Q2PPJ7 1873 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 TRBV25-1A0A075B6N4 114 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 H3BMM0 161 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 PPIFP30405 207 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 OR10W1Q8NGF6 305 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 UBE2WQ96B02 151 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 HIST1H4GQ99525 98 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 A0A1B0GWJ7 208 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 ARL14EPLP0DKL9 152 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 C5orf30Q96GV9 206 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 SPAG8Q99932 426 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 H3BUA1 57 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 RPL32P62910 135 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 DNLZQ5SXM8 178 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 FAM24BQ8N5W8 94 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 C4orf3Q8WVX3 66 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 ZGRF1Q86YA3 2104 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 IGHV3-30P01768 117 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 IGHV3-33P01772 117 aa7.41□□□□□ -1.22
LIMCH1-202ENST00000381753 IGHV3-30-3P0DP02 117 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms