RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SPINK9Q5DT21 86 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 TMEM170BQ5T4T1 132 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 SPSB4Q96A44 273 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 SMIM10Q96HG1 83 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 ZFP30Q9Y2G7 519 aa3.3□□□□□ -1.88
USH2A-202ENST00000366942 IGHV1-24A0A0C4DH33 117 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 GAGE12JA6NER3 117 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 SIVA1O15304 175 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 SPINK4O60575 86 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 TOMM40O96008 361 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 CD24P25063 80 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 SNRPNP63162 240 aaKnown RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 RPL18AQ02543 176 aaKnown RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 GAGE1Q13065 139 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 GAGE4Q13068 117 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 GAGE5Q13069 117 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 GAGE13Q4V321 117 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 PSMG3Q9BT73 122 aaPredicted RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 MYO18AQ92614 2054 aaKnown RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 TRPM3Q9HCF6 1732 aaPredicted RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 CENPVL3A0A0U1RRI6 287 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 PRSS29PA6NIE9 313 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 C16orf90A8MZG2 172 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 LY6HO94772 140 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 PPBPP02775 128 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 ZNF876PQ49A33 203 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 FAM74A3Q4VXF1 159 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 TMEM88Q6PEY1 159 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 LYZL1Q6UWQ5 148 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 GOLT1AQ6ZVE7 132 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 LYZL2Q7Z4W2 148 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 LDLRAD3Q86YD5 345 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 OR10G8Q8NGN5 311 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 PLA2G2EQ9NZK7 142 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 GAB2Q9UQC2 676 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 IGLV5-52A0A0A0MRZ9 124 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 A0A0J9YY99 117 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 ZAR1LA6NP61 321 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 MMP23AO75900 390 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 CXCL2P19875 107 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 HBBP68871 147 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 MRGPRG-AS1Q2M3A8 158 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 ORMDL2Q53FV1 153 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 MUC21Q5SSG8 566 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 ZNF880Q6PDB4 577 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 SLC25A48Q6ZT89 311 aaKnown RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 NEUROG1Q92886 237 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 C5orf30Q96GV9 206 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 IL36BQ9NZH7 164 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 A0A0G2JMM0 328 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 A0A1W2PPB8 328 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 A0A1W2PRS3 328 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 KIR3DP1A8MWS1 328 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 NXPH4O95158 308 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 INAFM2P0DMQ5 153 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 FAM3BP58499 235 aaPredicted RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 SSBP2P81877 361 aaPredicted RBP3.29□□□□□ -1.88
USH2A-202ENST00000366942 HIST3H3Q16695 136 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 TMEM123Q8N131 208 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 MTURNQ8N3F0 131 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 RNF185Q96GF1 192 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 OTORQ9NRC9 128 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 PRO0255Q9UI72 69 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 ZGRF1Q86YA3 2104 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 RALGAPA1Q6GYQ0 2036 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 SMCHD1A6NHR9 2005 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 CLDN34H7C241 214 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 NDUFA1O15239 70 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 IGLV2-23P01705 113 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 FRMD6-AS1P0C7T7 363 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 C5orf66Q9H5L9 145 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 ZNRD1Q9P1U0 126 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 FAM215AQ9Y5M1 114 aa3.29□□□□□ -1.88
USH2A-202ENST00000366942 HRKO00198 91 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 ATP6V0E1O15342 81 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 ZNHIT1O43257 154 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 GCSAMLQ5JQS6 135 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 TEX43Q6ZNM6 134 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 GTF2H5Q6ZYL4 71 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 LEAP2Q969E1 77 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 KLHDC3Q9BQ90 382 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 TDRD6O60522 2096 aaKnown RBP3.28□□□□□ -1.88
USH2A-202ENST00000366942 IGHV1OR15-1A0A075B7D0 117 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 A0A087WZ39 114 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 GAGE2BQ13066 116 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 PIGYQ3MUY2 71 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 LY6G6FQ5SQ64 297 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 OR5C1Q8NGR4 320 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 VPS25Q9BRG1 176 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 LAMTOR3Q9UHA4 124 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 DOCK2Q92608 1830 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 GTF3C1Q12789 2109 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 SAA2-SAA4A0A096LPE2 208 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 IGHV7-4-1A0A0J9YVY3 117 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 GRIFINA4D1Z8 144 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 DIRC3C9JPN6 131 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 SEC61GP60059 68 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 TMEM241Q24JQ0 296 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 ADAMTSL5Q6ZMM2 481 aa3.28□□□□□ -1.88
USH2A-202ENST00000366942 NRGNQ92686 78 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms