RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 HCFC1P51610 2035 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 MGST3O14880 152 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 ZNF138P52744 262 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 Q6ZS52 159 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 OR9G1Q8NH87 305 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 FAM173AQ9BQD7 235 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 ZNF355PQ9NSJ1 428 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 OCIAD1Q9NX40 245 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 A0A1B0GX51 115 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 A0A1W2PPI3 338 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 TNFRSF1AP19438 455 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 CD24P25063 80 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 ASIPP42127 132 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 RPS16P62249 146 aaKnown RBP5.36□□□□□ -1.55
ZNF540-201ENST00000316433 HBBP68871 147 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 MZT1Q08AG7 82 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 MYO9BQ13459 2157 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 ZNF542PQ5EBM4 170 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 MBNL2Q5VZF2 373 aaKnown RBP5.36□□□□□ -1.55
ZNF540-201ENST00000316433 PMS2CLQ68D20 193 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 C8orf31Q8N9H6 132 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 GATD1Q8NB37 220 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 DLX4Q92988 240 aaPredicted RBP5.36□□□□□ -1.55
ZNF540-201ENST00000316433 RTL8AQ9BWD3 113 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 DKK4Q9UBT3 224 aa5.36□□□□□ -1.55
ZNF540-201ENST00000316433 TRBV6-1A0A0K0K1D8 114 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 OOEPA6NGQ2 149 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 HIGD1CA8MV81 97 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 K7EMI3 77 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 NPFFO15130 113 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 CRLF1O75462 422 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 SP1P08047 785 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 SCTP09683 121 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 RPL30P62888 115 aaKnown RBP5.35□□□□□ -1.55
ZNF540-201ENST00000316433 FAM231DQ6ZW35 169 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 H2BFWTQ7Z2G1 175 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 OR13A1Q8NGR1 328 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 PIGCQ92535 297 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 IGF2BP2-AS1Q96M15 143 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 C21orf62Q9NYP8 219 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 CHD9Q3L8U1 2897 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 GGTLC3B5MD39 225 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 DUTP33316 252 aaKnown RBP5.35□□□□□ -1.55
ZNF540-201ENST00000316433 EMP1P54849 157 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 SPRNQ5BIV9 151 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 ZNF808Q8N4W9 903 aaPredicted RBP5.35□□□□□ -1.55
ZNF540-201ENST00000316433 OR8A1Q8NGG7 326 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 SNRNP40Q96DI7 357 aaKnown RBP5.35□□□□□ -1.55
ZNF540-201ENST00000316433 PRADC1Q9BSG0 188 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 AP5S1Q9NUS5 200 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 MYO7BQ6PIF6 2116 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 SPAG17Q6Q759 2223 aa5.35□□□□□ -1.55
ZNF540-201ENST00000316433 TMEM30CPA0ZSE6 113 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 LTAP01374 205 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 B4GALT1P15291 398 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 ASCL5Q7RTU5 278 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 CDX2Q99626 313 aaPredicted RBP5.34□□□□□ -1.55
ZNF540-201ENST00000316433 ZG16O60844 167 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 CACNG7P62955 275 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 Q6ZQT7 251 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 CFHR4Q92496 578 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 TCF19Q9Y242 345 aa5.34□□□□□ -1.55
ZNF540-201ENST00000316433 FOXA2Q9Y261 457 aaPredicted RBP5.34□□□□□ -1.55
ZNF540-201ENST00000316433 FOLR3P41439 243 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 EFNB3Q15768 340 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 TBC1D28Q2M2D7 210 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 ASPHD1Q5U4P2 390 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 DRAM1Q8N682 238 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 ASCL2Q99929 193 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 PRO3102Q9H379 93 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 EDA2RQ9HAV5 297 aa5.34□□□□□ -1.56
ZNF540-201ENST00000316433 HEYLQ9NQ87 328 aaPredicted RBP5.34□□□□□ -1.56
ZNF540-201ENST00000316433 TRBV25-1A0A075B6N4 114 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 IGHV3-20A0A0C4DH32 117 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 MIC13Q5XKP0 118 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 ABHD12Q8N2K0 398 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 OR1L4Q8NGR5 311 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 TMEM160Q9NX00 188 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 C5orf49A4QMS7 147 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 LINC01548A6NM66 108 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 C15orf62A8K5M9 175 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 APOHP02749 345 aaPredicted RBP5.33□□□□□ -1.56
ZNF540-201ENST00000316433 CGB3P0DN86 165 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 CGB7P0DN87 165 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 ORM2P19652 201 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 HES1Q14469 280 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 OR1C1Q15619 314 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 RBPMS2Q6ZRY4 209 aaKnown RBP5.33□□□□□ -1.56
ZNF540-201ENST00000316433 CIARTQ8N365 385 aaPredicted RBP5.33□□□□□ -1.56
ZNF540-201ENST00000316433 MDS2Q8NDY4 140 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 FGFBP3Q8TAT2 258 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 PIFOQ8TCI5 191 aa5.33□□□□□ -1.56
ZNF540-201ENST00000316433 ZNF837Q96EG3 531 aaPredicted RBP5.33□□□□□ -1.56
ZNF540-201ENST00000316433 NDUFS7O75251 213 aa5.32□□□□□ -1.56
ZNF540-201ENST00000316433 NDUFA7O95182 113 aa5.32□□□□□ -1.56
ZNF540-201ENST00000316433 IGLV1-44P01699 117 aa5.32□□□□□ -1.56
ZNF540-201ENST00000316433 IGLC6P0CF74 106 aa5.32□□□□□ -1.56
ZNF540-201ENST00000316433 MYF5P13349 255 aa5.32□□□□□ -1.56
ZNF540-201ENST00000316433 BRWD1-AS2P59051 145 aa5.32□□□□□ -1.56
ZNF540-201ENST00000316433 RPS28P62857 69 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms