RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 CACFD1Q9UGQ2 172 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 TMEM56-RWDD3S4R434 201 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 HLA-DRB4X5D2U9 266 aa17.87■□□□□ 0.45
PTPRF-216ENST00000617451 PSG1P11464 419 aa17.86■□□□□ 0.45
PTPRF-216ENST00000617451 NKX2-1P43699 371 aaPredicted RBP17.86■□□□□ 0.45
PTPRF-216ENST00000617451 NMSQ5H8A3 153 aa17.86■□□□□ 0.45
PTPRF-216ENST00000617451 NEU1Q99519 415 aa17.86■□□□□ 0.45
PTPRF-216ENST00000617451 MIXL1Q9H2W2 232 aa17.86■□□□□ 0.45
PTPRF-216ENST00000617451 GPR132Q9UNW8 380 aa17.86■□□□□ 0.45
PTPRF-216ENST00000617451 OR51G1Q8NGK1 321 aa17.85■□□□□ 0.45
PTPRF-216ENST00000617451 ZNF705FA8MVS1 300 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-216ENST00000617451 DISC1C4P0D8 188 aa17.84■□□□□ 0.45
PTPRF-216ENST00000617451 ZNF705DP0CH99 300 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-216ENST00000617451 ZNF705BP0CI00 300 aaPredicted RBP17.84■□□□□ 0.45
PTPRF-216ENST00000617451 MRPS10P82664 201 aaKnown RBP17.84■□□□□ 0.45
PTPRF-216ENST00000617451 RTL8CO15255 209 aa17.83■□□□□ 0.44
PTPRF-216ENST00000617451 SULT1A3P0DMM9 295 aa17.83■□□□□ 0.44
PTPRF-216ENST00000617451 SULT1A4P0DMN0 295 aa17.83■□□□□ 0.44
PTPRF-216ENST00000617451 GDF5OSQ5U4N7 250 aa17.83■□□□□ 0.44
PTPRF-216ENST00000617451 RNF125Q96EQ8 232 aa17.83■□□□□ 0.44
PTPRF-216ENST00000617451 U3KQ87 197 aa17.83■□□□□ 0.44
PTPRF-216ENST00000617451 TMEM189A5PLL7 270 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 SMIM9A6NGZ8 99 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 IFNA10P01566 189 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 SPART-AS1P0CW21 52 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 OR4C16Q8NGL9 310 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 SMIM4Q8WVI0 70 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 IL22RA2Q969J5 263 aa17.82■□□□□ 0.44
PTPRF-216ENST00000617451 PRSS29PA6NIE9 313 aa17.81■□□□□ 0.44
PTPRF-216ENST00000617451 M0R2N4 97 aa17.81■□□□□ 0.44
PTPRF-216ENST00000617451 AKAIN1P0CW23 69 aa17.81■□□□□ 0.44
PTPRF-216ENST00000617451 NUP62P37198 522 aaPredicted RBP17.81■□□□□ 0.44
PTPRF-216ENST00000617451 DEFB1P60022 68 aa17.81■□□□□ 0.44
PTPRF-216ENST00000617451 KLF9Q13886 244 aaPredicted RBP17.81■□□□□ 0.44
PTPRF-216ENST00000617451 WDR12Q9GZL7 423 aaKnown RBP17.81■□□□□ 0.44
PTPRF-216ENST00000617451 RGS5O15539 181 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 IGKV3-20P01619 116 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 EMP1P54849 157 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 OR8G2PQ6IF36 304 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 CLUHP3Q96NS8 147 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 PRRT1Q99946 306 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 PBDC1Q9BVG4 233 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 SAV1Q9H4B6 383 aaPredicted RBP17.8■□□□□ 0.44
PTPRF-216ENST00000617451 PRR13Q9NZ81 148 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 HSPB7Q9UBY9 170 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 PFDN2Q9UHV9 154 aa17.8■□□□□ 0.44
PTPRF-216ENST00000617451 CTDSP2O14595 271 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 MED14OSP0DP75 135 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 FXYD7P58549 80 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 LGALS9BQ3B8N2 356 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 FOXI2Q6ZQN5 318 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 LGI3Q8N145 548 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 OR51S1Q8NGJ8 323 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 LINC00052Q96N35 136 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 KCNIP3Q9Y2W7 256 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 RFNGQ9Y644 331 aa17.79■□□□□ 0.44
PTPRF-216ENST00000617451 SMIM18P0DKX4 95 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 ID1P41134 155 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 CCR6P51684 374 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 ZNF709Q8N972 641 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 DTD1Q8TEA8 209 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 FAM210BQ96KR6 192 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 RBKSQ9H477 322 aa17.78■□□□□ 0.44
PTPRF-216ENST00000617451 IGKV1D-37A0A075B6S9 117 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 IGHV3OR16-12A0A075B7B8 117 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 SOCS3O14543 225 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 CTDSPLO15194 276 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 GPX4P36969 197 aaPredicted RBP17.77■□□□□ 0.44
PTPRF-216ENST00000617451 PSMB3P49720 205 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 ZNF90Q03938 601 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 GAMTQ14353 236 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 SMCO1Q147U7 214 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 C1orf194Q5T5A4 169 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 DKK2Q9UBU2 259 aa17.77■□□□□ 0.44
PTPRF-216ENST00000617451 A0A0B4J2A0 478 aa17.76■□□□□ 0.43
PTPRF-216ENST00000617451 ZFP92A6NM28 416 aa17.76■□□□□ 0.43
PTPRF-216ENST00000617451 ATP5IP56385 69 aaPredicted RBP17.76■□□□□ 0.43
PTPRF-216ENST00000617451 LYZL2Q7Z4W2 148 aa17.76■□□□□ 0.43
PTPRF-216ENST00000617451 CLVS1Q8IUQ0 354 aaPredicted RBP17.76■□□□□ 0.43
PTPRF-216ENST00000617451 SHPKQ9UHJ6 478 aa17.76■□□□□ 0.43
PTPRF-216ENST00000617451 TEX48A0A1B0GUV7 120 aa17.75■□□□□ 0.43
PTPRF-216ENST00000617451 IFNA21P01568 189 aa17.75■□□□□ 0.43
PTPRF-216ENST00000617451 SUPT4H1P63272 117 aaKnown RBP17.75■□□□□ 0.43
PTPRF-216ENST00000617451 ZNF79Q15937 498 aa17.75■□□□□ 0.43
PTPRF-216ENST00000617451 NIPSNAP3BQ9BS92 247 aa17.75■□□□□ 0.43
PTPRF-216ENST00000617451 FAM222AQ5U5X8 452 aa17.74■□□□□ 0.43
PTPRF-216ENST00000617451 SPATA31B1PQ5VZV4 182 aa17.74■□□□□ 0.43
PTPRF-216ENST00000617451 OR4B1Q8NGF8 309 aa17.74■□□□□ 0.43
PTPRF-216ENST00000617451 COQ8AQ8NI60 647 aa17.74■□□□□ 0.43
PTPRF-216ENST00000617451 SLC35E1Q96K37 410 aa17.74■□□□□ 0.43
PTPRF-216ENST00000617451 SLC35B3Q9H1N7 401 aa17.74■□□□□ 0.43
PTPRF-216ENST00000617451 ANKRD20A5PA0PJZ0 165 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 PAX9P55771 341 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 LYZP61626 148 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 IL18Q14116 193 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 Q6ZR54 194 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 UBE2DNLQ8IWF7 75 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 DIRAS2Q96HU8 199 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 SCGB3A2Q96PL1 93 aa17.73■□□□□ 0.43
PTPRF-216ENST00000617451 PLA2G2EQ9NZK7 142 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms