RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 DNAH1Q9P2D7 4330 aa11.03□□□□□ -0.64
LIG1-215ENST00000597901 IGKV1D-37A0A075B6S9 117 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 NAP1L6A6NFF2 107 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 ZFP92A6NM28 416 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 KNCNA6PVL3 124 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 CA1P00915 261 aaPredicted RBP11.02□□□□□ -0.65
LIG1-215ENST00000597901 ZNF90Q03938 601 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 GGNBP1Q5YKI7 109 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 CEMP1Q6PRD7 247 aaPredicted RBP11.02□□□□□ -0.65
LIG1-215ENST00000597901 SLC35E1Q96K37 410 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 RAB40CQ96S21 281 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 MAGT1Q9H0U3 335 aa11.02□□□□□ -0.65
LIG1-215ENST00000597901 LINC00854A0A1B0GVQ3 168 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 C9orf170A2RU37 121 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 WRBO00258 174 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 SYNGR2O43760 224 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 NDUFB6O95139 128 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 GIG44P09565 113 aaPredicted RBP11.01□□□□□ -0.65
LIG1-215ENST00000597901 UBE2MP61081 183 aaKnown RBP11.01□□□□□ -0.65
LIG1-215ENST00000597901 TRIQKQ629K1 86 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 TRPT1Q86TN4 253 aaKnown RBP11.01□□□□□ -0.65
LIG1-215ENST00000597901 RNF125Q96EQ8 232 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 SDHCQ99643 169 aaPredicted RBP11.01□□□□□ -0.65
LIG1-215ENST00000597901 PAIP2BQ9ULR5 123 aaKnown RBP11.01□□□□□ -0.65
LIG1-215ENST00000597901 FLVCR2Q9UPI3 526 aa11.01□□□□□ -0.65
LIG1-215ENST00000597901 SNRPGP15A8MWD9 76 aa11□□□□□ -0.65
LIG1-215ENST00000597901 RPP30P78346 268 aaKnown RBP11□□□□□ -0.65
LIG1-215ENST00000597901 ACTL10Q5JWF8 245 aa11□□□□□ -0.65
LIG1-215ENST00000597901 MORN3Q6PF18 240 aaPredicted RBP11□□□□□ -0.65
LIG1-215ENST00000597901 SIGLEC15Q6ZMC9 328 aa11□□□□□ -0.65
LIG1-215ENST00000597901 CIB3Q96Q77 187 aaPredicted RBP11□□□□□ -0.65
LIG1-215ENST00000597901 PBDC1Q9BVG4 233 aa11□□□□□ -0.65
LIG1-215ENST00000597901 SEPSECSQ9HD40 501 aaKnown RBP11□□□□□ -0.65
LIG1-215ENST00000597901 PFDN2Q9UHV9 154 aa11□□□□□ -0.65
LIG1-215ENST00000597901 NUPR2A6NF83 97 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 ADAP1O75689 374 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 FABP1P07148 127 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 ID3Q02535 119 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 OR2F1Q13607 317 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 PSMG4Q5JS54 123 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 OR8G2PQ6IF36 304 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 TRGV9Q99603 122 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 NRN1Q9NPD7 142 aa10.99□□□□□ -0.65
LIG1-215ENST00000597901 PLECQ15149 4684 aaKnown RBP10.99□□□□□ -0.65
LIG1-215ENST00000597901 CENPXA8MT69 81 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 OR4E1P0C645 316 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 SPP1P10451 314 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 TMEM41BQ5BJD5 291 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 SPANXN5Q5MJ07 72 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 THAP8Q8NA92 274 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 C11orf45Q8TAV5 145 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 LYSTQ99698 3801 aa10.98□□□□□ -0.65
LIG1-215ENST00000597901 KLK5Q9Y337 293 aaPredicted RBP10.98□□□□□ -0.65
LIG1-215ENST00000597901 IGKV1OR2-108A0A075B7D4 117 aa10.97□□□□□ -0.65
LIG1-215ENST00000597901 PRSS46E5RG02 174 aa10.97□□□□□ -0.65
LIG1-215ENST00000597901 DEFB4AO15263 64 aa10.97□□□□□ -0.65
LIG1-215ENST00000597901 NUP62P37198 522 aaPredicted RBP10.97□□□□□ -0.65
LIG1-215ENST00000597901 LYZP61626 148 aa10.97□□□□□ -0.65
LIG1-215ENST00000597901 SNRPD3P62318 126 aaKnown RBP10.97□□□□□ -0.65
LIG1-215ENST00000597901 COQ8AQ8NI60 647 aa10.97□□□□□ -0.65
LIG1-215ENST00000597901 PHLDA1Q8WV24 401 aaPredicted RBP10.97□□□□□ -0.65
LIG1-215ENST00000597901 C7orf50Q9BRJ6 194 aaKnown RBP10.97□□□□□ -0.65
LIG1-215ENST00000597901 C11orf68Q9H3H3 251 aaKnown RBP10.97□□□□□ -0.65
LIG1-215ENST00000597901 NDUFA13Q9P0J0 144 aa10.97□□□□□ -0.65
LIG1-215ENST00000597901 LY6G6CO95867 125 aa10.96□□□□□ -0.65
LIG1-215ENST00000597901 IFNA21P01568 189 aa10.96□□□□□ -0.65
LIG1-215ENST00000597901 IL7P13232 177 aa10.96□□□□□ -0.65
LIG1-215ENST00000597901 ANXA7P20073 488 aaKnown RBP10.96□□□□□ -0.65
LIG1-215ENST00000597901 C4BPBP20851 252 aa10.96□□□□□ -0.65
LIG1-215ENST00000597901 BTCP35070 178 aa10.96□□□□□ -0.65
LIG1-215ENST00000597901 NANOS2P60321 138 aaKnown RBP10.96□□□□□ -0.65
LIG1-215ENST00000597901 POLR2GP62487 172 aaKnown RBP eCLIP10.96□□□□□ -0.65
LIG1-215ENST00000597901 C1orf194Q5T5A4 169 aa10.96□□□□□ -0.65
LIG1-215ENST00000597901 STRAPQ9Y3F4 350 aaKnown RBP10.96□□□□□ -0.65
LIG1-215ENST00000597901 H3BMM0 161 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 CFDP00746 253 aaPredicted RBP10.95□□□□□ -0.66
LIG1-215ENST00000597901 NKX2-1P43699 371 aaPredicted RBP10.95□□□□□ -0.66
LIG1-215ENST00000597901 CNPY1Q3B7I2 92 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 C4orf46Q504U0 113 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 TMEM182Q6ZP80 229 aaPredicted RBP10.95□□□□□ -0.66
LIG1-215ENST00000597901 CSNK1G2-AS1Q8NCQ2 148 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 LINC00476Q8WZB0 136 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 PPP1R14BQ96C90 147 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 WDR12Q9GZL7 423 aaKnown RBP10.95□□□□□ -0.66
LIG1-215ENST00000597901 MFFQ9GZY8 342 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 CLEC5AQ9NY25 188 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 FBXL17Q9UF56 701 aa10.95□□□□□ -0.66
LIG1-215ENST00000597901 ZNF705EA8MWA4 302 aaPredicted RBP10.94□□□□□ -0.66
LIG1-215ENST00000597901 H3BP45 60 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 PLA2G10O15496 165 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 RBMY1A1P0DJD3 496 aaKnown RBP10.94□□□□□ -0.66
LIG1-215ENST00000597901 RBMY1CP0DJD4 496 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 RBMY1FQ15415 496 aaKnown RBP10.94□□□□□ -0.66
LIG1-215ENST00000597901 OR8I2Q8N0Y5 310 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 Q8NAQ8 132 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 OR4D5Q8NGN0 318 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 SMIM8Q96KF7 97 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 LINC00052Q96N35 136 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 PSENENQ9NZ42 101 aa10.94□□□□□ -0.66
LIG1-215ENST00000597901 IGHV4-28A0A0C4DH34 117 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms