RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CTRB2Q6GPI1 263 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 S100A7AQ86SG5 101 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 NDUFA11Q86Y39 141 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 TTC9CQ8N5M4 171 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 THAP8Q8NA92 274 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 RAB24Q969Q5 203 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 LINC00052Q96N35 136 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 FAM103A1Q9BTL3 118 aaKnown RBP7.95□□□□□ -1.14
SS18-207ENST00000577636 SEC11CQ9BY50 192 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 SLC35B3Q9H1N7 401 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 TMEM231Q9H6L2 316 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 MANBALQ9NQG1 85 aa7.95□□□□□ -1.14
SS18-207ENST00000577636 TRAV30A0A087WSZ9 112 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 IGHV7-81A0A0B4J1V7 117 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 COX7A2P2O60397 106 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 CXorf1O96002 111 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 FGF8P55075 233 aaPredicted RBP7.94□□□□□ -1.14
SS18-207ENST00000577636 SSBP2P81877 361 aaPredicted RBP7.94□□□□□ -1.14
SS18-207ENST00000577636 PRR20EP86478 221 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 PRR20CP86479 221 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 PRR20DP86480 221 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 PRR20BP86481 221 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 PRR20AP86496 221 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 PMS2P11Q13670 270 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 ZNF726P1Q15940 193 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 MLANAQ16655 118 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 KHDC3LQ587J8 217 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 SPSB3Q6PJ21 355 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 UNQ5815/PRO19632Q6UWF5 114 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 SLC35E3Q7Z769 313 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 SVBPQ8N300 66 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 C5orf56Q8N8D9 126 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 TMEM116Q8NCL8 245 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 WWC2-AS2Q96NR7 200 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 TRGV9Q99603 122 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 MRPL32Q9BYC8 188 aaKnown RBP7.94□□□□□ -1.14
SS18-207ENST00000577636 FNDC4Q9H6D8 234 aaPredicted RBP7.94□□□□□ -1.14
SS18-207ENST00000577636 ZNF702PQ9H963 129 aa7.94□□□□□ -1.14
SS18-207ENST00000577636 ELOA3CA0A087WX78 387 aaPredicted RBP7.93□□□□□ -1.14
SS18-207ENST00000577636 WI2-2373I1.2A0A1W2PRP0 233 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 YIF1AO95070 293 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 HSPB1P04792 205 aaKnown RBP7.93□□□□□ -1.14
SS18-207ENST00000577636 LINC00869P0C866 280 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 BCL2P10415 239 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 PF4V1P10720 104 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 CCL20P78556 96 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 SRSF3P84103 164 aaKnown RBP7.93□□□□□ -1.14
SS18-207ENST00000577636 ECSCRQ19T08 205 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 C9orf152Q5JTZ5 239 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 ZNF506Q5JVG8 444 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 FAM78BQ5VT40 261 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 TMEM219Q86XT9 240 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 OR4X1Q8NH49 305 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 RXFP4Q8TDU9 374 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 GATAD1Q8WUU5 269 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 ZNF355PQ9NSJ1 428 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 SERTAD4Q9NUC0 356 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 GAR1Q9NY12 217 aaKnown RBP7.93□□□□□ -1.14
SS18-207ENST00000577636 TECRQ9NZ01 308 aaKnown RBP7.93□□□□□ -1.14
SS18-207ENST00000577636 VAX2Q9UIW0 290 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 FUT9Q9Y231 359 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 RYR3Q15413 4870 aa7.93□□□□□ -1.14
SS18-207ENST00000577636 LOC102723971A0A1B0GUV8 181 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 A6NDX4 124 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 ADARB2-AS1A8MUL3 147 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 I3L2K1 104 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 HMGB3O15347 200 aaKnown RBP7.92□□□□□ -1.14
SS18-207ENST00000577636 GNG7O60262 68 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 SNAPINO95295 136 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 IGHV3-48P01763 117 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 PF4P02776 101 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 S100A7P31151 101 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 CEBPGP53567 150 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 MFAP2P55001 183 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 MFAP4P55083 255 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 AKIRIN2Q53H80 203 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 SOHLH1Q5JUK2 328 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 C10orf113Q5VZT2 155 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 OR5T1Q8NG75 326 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 SUN5Q8TC36 379 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 TXNDC17Q9BRA2 123 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 PRSS22Q9GZN4 317 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 DNAJC4Q9NNZ3 241 aa7.92□□□□□ -1.14
SS18-207ENST00000577636 CARHSP1Q9Y2V2 147 aaKnown RBP7.92□□□□□ -1.14
SS18-207ENST00000577636 IGLV11-55A0A075B6I3 123 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 IGKV1OR2-108A0A075B7D4 117 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 IGHV3-21A0A0B4J1V1 117 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 TRAV41A0A0B4J266 112 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 ATP6V0E1O15342 81 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 CLN5O75503 358 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 OR5G3P0C626 314 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 STAG3L2P0CL84 134 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 STAG3L3P0CL85 134 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 HOXD3P31249 432 aaPredicted RBP7.91□□□□□ -1.14
SS18-207ENST00000577636 KRTAP10-11P60412 298 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 NDPQ00604 133 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 TMEM95Q3KNT9 176 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 Q56UQ5 140 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 GCSAMLQ5JQS6 135 aa7.91□□□□□ -1.14
SS18-207ENST00000577636 PQLC2Q6ZP29 291 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms