RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CA2P00918 260 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 HBZP02008 142 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 CRYBA1P05813 215 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 RBMY1DP0C7P1 496 aaKnown RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 RBMY1A1P0DJD3 496 aaKnown RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 IGKV1-13P0DP09 117 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 FAM236CP0DP71 79 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 FGF6P10767 208 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 PIPP12273 146 aaPredicted RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 RAB3BP20337 219 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 APLNRP35414 380 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 G6PCP35575 357 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 CTBP2P56545 445 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 FABP5Q01469 135 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 ZNF117Q03924 483 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 LOXL1Q08397 574 aaPredicted RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 TMEM267Q0VDI3 215 aaPredicted RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 IL15RAQ13261 267 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 KIAA0087Q14695 138 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 RSPO1Q2MKA7 263 aaPredicted RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 IBA57Q5T440 356 aaKnown RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 MARCH3Q86UD3 253 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 ZFP41Q8N8Y5 198 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 APCDD1LQ8NCL9 501 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 OR4M1Q8NGD0 313 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 ORAOV1Q8WV07 137 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 CCL17Q92583 94 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 PTX4Q96A99 478 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 CMBLQ96DG6 245 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 TSSK6Q9BXA6 273 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 SLIRPQ9GZT3 109 aaKnown RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 TMEM222Q9H0R3 208 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 NOX3Q9HBY0 568 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 SCN3BQ9NY72 215 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 TVP23BQ9NYZ1 205 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 NAT8BQ9UHF3 227 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 TRAPPC2LQ9UL33 140 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 MCTS1Q9ULC4 181 aaKnown RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 SIGLEC7Q9Y286 467 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 KLF13Q9Y2Y9 288 aaPredicted RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 LSM2Q9Y333 95 aaKnown RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 WASHC3Q9Y3C0 194 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 MED31Q9Y3C7 131 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 CACNA1EQ15878 2313 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 EP300Q09472 2414 aaPredicted RBP2.99□□□□□ -1.93
NUP88-213ENST00000576862 ASXL3Q9C0F0 2248 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 CABIN1Q9Y6J0 2220 aa2.99□□□□□ -1.93
NUP88-213ENST00000576862 PCM1Q15154 2024 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 TRAV27A0A087WT01 109 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 PGPA6NDG6 321 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 C8orf87E5RJ46 101 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.98□□□□□ -1.93
NUP88-213ENST00000576862 H7C417 338 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 M0R143 59 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 PSPHP1O15172 72 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 NDUFS5O43920 106 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 KLF7O75840 302 aaPredicted RBP2.98□□□□□ -1.93
NUP88-213ENST00000576862 GABARAPO95166 117 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 NRASP01111 189 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 CECR9P0C854 216 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 POLR2HP52434 150 aaKnown RBP2.98□□□□□ -1.93
NUP88-213ENST00000576862 TMBIM6P55061 237 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 NCS1P62166 190 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 HLA-DRB3P79483 266 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 ZNF266Q14584 549 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 Q499Y3 187 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 LRRC10Q5BKY1 277 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 PRSS54Q6PEW0 395 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 TCF23Q7RTU1 214 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 CAMK2N1Q7Z7J9 78 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 C11orf72Q8NBR9 251 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 LY6G5BQ8NDX9 201 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 OR8B12Q8NGG6 310 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 OR1N2Q8NGR9 330 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 RAB2BQ8WUD1 216 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 SFT2D1Q8WV19 159 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 EIF5A2Q9GZV4 153 aaKnown RBP2.98□□□□□ -1.93
NUP88-213ENST00000576862 IFI27L2Q9H2X8 130 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 OR52D1Q9H346 318 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 MRPL16Q9NX20 251 aaKnown RBP2.98□□□□□ -1.93
NUP88-213ENST00000576862 MTFP1Q9UDX5 166 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 ZNF629Q9UEG4 869 aaPredicted RBP2.98□□□□□ -1.93
NUP88-213ENST00000576862 SLC25A15Q9Y619 301 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 CUL9Q8IWT3 2517 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 MUC6Q6W4X9 2439 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 WDR87Q6ZQQ6 2873 aa2.98□□□□□ -1.93
NUP88-213ENST00000576862 GOLGA4Q13439 2230 aaKnown RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 OTOGLQ3ZCN5 2332 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 GVINP1Q7Z2Y8 2422 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 IGHV1-45A0A0A0MS14 117 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 TRAV38-1A0A0B4J264 116 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 A0A1W2PQD3 144 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 PLAC8L1A1L4L8 177 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 INMT-MINDY4F8WBC2 141 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 EIF4EP06730 217 aaKnown RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 COX6A1P12074 109 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 RPL7P18124 248 aaKnown RBP2.97□□□□□ -1.93
NUP88-213ENST00000576862 GADD45AP24522 165 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 TGFBR1P36897 503 aa2.97□□□□□ -1.93
NUP88-213ENST00000576862 COPZ1P61923 177 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms