RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 FAM209BQ5JX69 171 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 SPSB3Q6PJ21 355 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 C10orf99Q6UWK7 81 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 LCNL1Q6ZST4 164 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 LYPD6BQ8NI32 183 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 Q8WTZ3 238 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 GATAD1Q8WUU5 269 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 SFT2D1Q8WV19 159 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 PFDN5Q99471 154 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 RNF2Q99496 336 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 CHRDL1Q9BU40 450 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 HRH4Q9H3N8 390 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 MED9Q9NWA0 146 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 PFDN2Q9UHV9 154 aa10.61□□□□□ -0.71
CCDC40-209ENST00000573474 NSD1Q96L73 2696 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-209ENST00000573474 TRAV1-1A0A0B4J248 108 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 NUDT19A8MXV4 375 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 TGOLN2O43493 480 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 HYPMO75409 117 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 OR5G3P0C626 314 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 ADMP35318 185 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 KIAA0141Q14154 515 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-209ENST00000573474 C10orf113Q5VZT2 155 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 ZNF343Q6P1L6 599 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 ZNF600Q6ZNG1 722 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 KLHDC1Q8N7A1 406 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 ZNF491Q8N8L2 437 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 OR4X2Q8NGF9 303 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 OR51G1Q8NGK1 321 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 MYOZ3Q8TDC0 251 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 TMEM37Q8WXS4 190 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 RAB24Q969Q5 203 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 SLC25A22Q9H936 323 aa10.6□□□□□ -0.71
CCDC40-209ENST00000573474 F8P00451 2351 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 WI2-2373I1.2A0A1W2PRP0 233 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 MAP1LC3B2A6NCE7 125 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 OR2C1O95371 312 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 IGHV3-11P01762 117 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 RPLP1P05386 114 aaKnown RBP10.59□□□□□ -0.71
CCDC40-209ENST00000573474 ORM2P19652 201 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 LYZP61626 148 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 FAM78BQ5VT40 261 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 LCN15Q6UWW0 184 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 PATE2Q6UY27 113 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 SSX7Q7RTT5 188 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 OR5AU1Q8NGC0 362 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 OR1B1Q8NGR6 318 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 LINC01006Q8NI28 216 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 MRPL32Q9BYC8 188 aaKnown RBP10.59□□□□□ -0.71
CCDC40-209ENST00000573474 MAP1LC3BQ9GZQ8 125 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 GNB4Q9HAV0 340 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 DOK5Q9P104 306 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 FUT9Q9Y231 359 aa10.59□□□□□ -0.71
CCDC40-209ENST00000573474 FN1P02751 2386 aaKnown RBP10.59□□□□□ -0.71
CCDC40-209ENST00000573474 ARL3P36405 182 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 RELQ04864 619 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-209ENST00000573474 IL34Q6ZMJ4 242 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 SLC7A5P1Q8MH63 180 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 OR4F5Q8NH21 305 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 MARC2Q969Z3 335 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 RNF125Q96EQ8 232 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 UBE2E2Q96LR5 201 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 SEPSECSQ9HD40 501 aaKnown RBP10.58□□□□□ -0.72
CCDC40-209ENST00000573474 HIGD1AQ9Y241 93 aa10.58□□□□□ -0.72
CCDC40-209ENST00000573474 A0A1B0GV50 99 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 ANKRD34BA5PLL1 514 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 PPP5D1E7EU14 171 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 IL4P05112 153 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 STAG3L2P0CL84 134 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 STAG3L3P0CL85 134 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 TAS2R45P59539 299 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 SPATA31B1PQ5VZV4 182 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 MIR17HGQ75NE6 70 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 S100A7AQ86SG5 101 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 COMMD7Q86VX2 200 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 WIPF2Q8TF74 440 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-209ENST00000573474 PBDC1Q9BVG4 233 aa10.57□□□□□ -0.72
CCDC40-209ENST00000573474 TECRQ9NZ01 308 aaKnown RBP10.57□□□□□ -0.72
CCDC40-209ENST00000573474 MRPL27Q9P0M9 148 aaKnown RBP10.57□□□□□ -0.72
CCDC40-209ENST00000573474 PEF1Q9UBV8 284 aaKnown RBP10.57□□□□□ -0.72
CCDC40-209ENST00000573474 PUS1Q9Y606 427 aaKnown RBP eCLIP10.57□□□□□ -0.72
CCDC40-209ENST00000573474 HMGB3O15347 200 aaKnown RBP10.56□□□□□ -0.72
CCDC40-209ENST00000573474 EIF3GO75821 320 aaKnown RBP eCLIP10.56□□□□□ -0.72
CCDC40-209ENST00000573474 CXorf1O96002 111 aa10.56□□□□□ -0.72
CCDC40-209ENST00000573474 C8orf88P0DMB2 117 aa10.56□□□□□ -0.72
CCDC40-209ENST00000573474 FGF8P55075 233 aaPredicted RBP10.56□□□□□ -0.72
CCDC40-209ENST00000573474 CCL20P78556 96 aa10.56□□□□□ -0.72
CCDC40-209ENST00000573474 TOMM20LQ6UXN7 152 aa10.56□□□□□ -0.72
CCDC40-209ENST00000573474 LINC00305Q7Z4B0 112 aa10.56□□□□□ -0.72
CCDC40-209ENST00000573474 IGHV3-35A0A0C4DH35 117 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 CLPSL1A2RUU4 121 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 RAB19A4D1S5 217 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 BMPR1BO00238 502 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 GGCTO75223 188 aaKnown RBP10.55□□□□□ -0.72
CCDC40-209ENST00000573474 TRBV12-3P01733 135 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 LGALS1P09382 135 aaKnown RBP10.55□□□□□ -0.72
CCDC40-209ENST00000573474 S100A7P31151 101 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 CDX1P47902 265 aaPredicted RBP10.55□□□□□ -0.72
CCDC40-209ENST00000573474 PMS2P11Q13670 270 aa10.55□□□□□ -0.72
CCDC40-209ENST00000573474 KHDC3LQ587J8 217 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms