RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CCR6P51684 374 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 SIGLEC15Q6ZMC9 328 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 GPR141Q7Z602 305 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 DIRAS2Q96HU8 199 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 RNF126Q9BV68 326 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 C1QTNF4Q9BXJ3 329 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 KRTAP17-1Q9BYP8 105 aa12.34□□□□□ -0.43
CLN3-216ENST00000565316 IGHV4-4A0A075B6R2 117 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 A0A0B4J2A0 478 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 ATP5IP56385 69 aaPredicted RBP12.33□□□□□ -0.44
CLN3-216ENST00000565316 NUTF2P61970 127 aaKnown RBP12.33□□□□□ -0.44
CLN3-216ENST00000565316 SUPT4H1P63272 117 aaKnown RBP12.33□□□□□ -0.44
CLN3-216ENST00000565316 IL18Q14116 193 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 C12orf74Q32Q52 190 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 LGI3Q8N145 548 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 DYNC2LI1Q8TCX1 351 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 SCGB3A2Q96PL1 93 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 PRR13Q9NZ81 148 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 CCDC59Q9P031 241 aaKnown RBP12.33□□□□□ -0.44
CLN3-216ENST00000565316 SHPKQ9UHJ6 478 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 CELA1Q9UNI1 258 aa12.33□□□□□ -0.44
CLN3-216ENST00000565316 IFNA10P01566 189 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 HLA-DRB4P13762 266 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 GPX4P36969 197 aaPredicted RBP12.32□□□□□ -0.44
CLN3-216ENST00000565316 NKX2-1P43699 371 aaPredicted RBP12.32□□□□□ -0.44
CLN3-216ENST00000565316 SMCO1Q147U7 214 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 LYZL2Q7Z4W2 148 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 CENPSQ8N2Z9 138 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 OR51G1Q8NGK1 321 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 DTD1Q8TEA8 209 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 RNF125Q96EQ8 232 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 SOSTQ9BQB4 213 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 RBKSQ9H477 322 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 SCP2D1Q9UJQ7 156 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 HLA-DRB4X5D2U9 266 aa12.32□□□□□ -0.44
CLN3-216ENST00000565316 AMBPP02760 352 aa12.31□□□□□ -0.44
CLN3-216ENST00000565316 NUP62P37198 522 aaPredicted RBP12.31□□□□□ -0.44
CLN3-216ENST00000565316 KLF9Q13886 244 aaPredicted RBP12.31□□□□□ -0.44
CLN3-216ENST00000565316 OR8G2PQ6IF36 304 aa12.31□□□□□ -0.44
CLN3-216ENST00000565316 NEU1Q99519 415 aa12.31□□□□□ -0.44
CLN3-216ENST00000565316 XCL2Q9UBD3 114 aa12.31□□□□□ -0.44
CLN3-216ENST00000565316 RSL24D1Q9UHA3 163 aaKnown RBP12.31□□□□□ -0.44
CLN3-216ENST00000565316 KIAA1109Q2LD37 5005 aa12.31□□□□□ -0.44
CLN3-216ENST00000565316 IGKV1D-37A0A075B6S9 117 aa12.3□□□□□ -0.44
CLN3-216ENST00000565316 GAMTQ14353 236 aa12.3□□□□□ -0.44
CLN3-216ENST00000565316 ZNF705AQ6ZN79 300 aaPredicted RBP12.3□□□□□ -0.44
CLN3-216ENST00000565316 RAB2BQ8WUD1 216 aa12.3□□□□□ -0.44
CLN3-216ENST00000565316 BCL7BQ9BQE9 202 aa12.3□□□□□ -0.44
CLN3-216ENST00000565316 DEFB131BA0A096LNP1 70 aa12.29□□□□□ -0.44
CLN3-216ENST00000565316 AKR1C4P17516 323 aa12.29□□□□□ -0.44
CLN3-216ENST00000565316 SRPXP78539 464 aa12.29□□□□□ -0.44
CLN3-216ENST00000565316 CLUHP3Q96NS8 147 aa12.29□□□□□ -0.44
CLN3-216ENST00000565316 PFDN2Q9UHV9 154 aa12.29□□□□□ -0.44
CLN3-216ENST00000565316 ZNF705FA8MVS1 300 aaPredicted RBP12.28□□□□□ -0.44
CLN3-216ENST00000565316 PITX3O75364 302 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 ZNF705DP0CH99 300 aaPredicted RBP12.28□□□□□ -0.44
CLN3-216ENST00000565316 ZNF705BP0CI00 300 aaPredicted RBP12.28□□□□□ -0.44
CLN3-216ENST00000565316 TMBIM6P55061 237 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 ZNF90Q03938 601 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 C1orf194Q5T5A4 169 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 GDF5OSQ5U4N7 250 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 PBDC1Q9BVG4 233 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 WDR12Q9GZL7 423 aaKnown RBP12.28□□□□□ -0.44
CLN3-216ENST00000565316 MCUBQ9NWR8 336 aa12.28□□□□□ -0.44
CLN3-216ENST00000565316 ZFP92A6NM28 416 aa12.27□□□□□ -0.45
CLN3-216ENST00000565316 SOCS3O14543 225 aa12.27□□□□□ -0.45
CLN3-216ENST00000565316 ANXA3P12429 323 aa12.27□□□□□ -0.45
CLN3-216ENST00000565316 FOXI2Q6ZQN5 318 aa12.27□□□□□ -0.45
CLN3-216ENST00000565316 ZNF767PQ75MW2 155 aa12.27□□□□□ -0.45
CLN3-216ENST00000565316 SLC35E1Q96K37 410 aa12.27□□□□□ -0.45
CLN3-216ENST00000565316 SLIRPQ9GZT3 109 aaKnown RBP12.27□□□□□ -0.45
CLN3-216ENST00000565316 SAV1Q9H4B6 383 aaPredicted RBP12.27□□□□□ -0.45
CLN3-216ENST00000565316 PIGBOS1A0A0B4J2F0 54 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 DUXBA0A1W2PPF3 345 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 SMIM9A6NGZ8 99 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 FABP1P07148 127 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 TNFSF8P32971 234 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 ID1P41134 155 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 PSMB3P49720 205 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 DEFB1P60022 68 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 OR1S1Q8NH92 325 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 TRGV9Q99603 122 aa12.26□□□□□ -0.45
CLN3-216ENST00000565316 PKHD1P08F94 4074 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 TMEM189A5PLL7 270 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 SPATA31B1PQ5VZV4 182 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 LINC00336Q6ZUF6 198 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 POM121L12Q8N7R1 296 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 LRTM2Q8N967 370 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 ZNF709Q8N972 641 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 LINC00052Q96N35 136 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 NDUFAF3Q9BU61 184 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 SCRT1Q9BWW7 348 aa12.25□□□□□ -0.45
CLN3-216ENST00000565316 FABP12A6NFH5 140 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 SNRPGP15A8MWD9 76 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 SPART-AS1P0CW21 52 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 P0DMU3 169 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 FAM231AP0DMU4 169 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 FAM231CP0DMU5 169 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 SLC25A6P12236 298 aa12.24□□□□□ -0.45
CLN3-216ENST00000565316 LYZP61626 148 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms