RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 RP1L1Q8IWN7 2480 aaPredicted RBP14.47□□□□□ -0.09
SYNE3-204ENST00000555759 CD300EQ496F6 205 aaPredicted RBP14.46□□□□□ -0.09
SYNE3-204ENST00000555759 TRGV9Q99603 122 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 SIPA1L1O43166 1804 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 PSMB11A5LHX3 300 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 SPANXDQ9BXN6 97 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 ZNF71Q9NQZ8 489 aaPredicted RBP14.46□□□□□ -0.09
SYNE3-204ENST00000555759 PGPEP1Q9NXJ5 209 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 TOMM40O96008 361 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 LYZL1Q6UWQ5 148 aa14.46□□□□□ -0.09
SYNE3-204ENST00000555759 FHL1Q13642 323 aa14.46□□□□□ -0.1
SYNE3-204ENST00000555759 PPP1R27Q86WC6 154 aa14.46□□□□□ -0.1
SYNE3-204ENST00000555759 ATP6V0BQ99437 205 aa14.46□□□□□ -0.1
SYNE3-204ENST00000555759 ZC2HC1BQ5TFG8 222 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 A0A0G2JRQ6 117 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 PLEKHB2Q96CS7 222 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 IGHV3OR16-13A0A075B7E8 117 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 IGHV3-74A0A0B4J1X5 117 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 KIR2DL5BA0A0G2JN68 375 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 KIR2DL5BA0A0G2JPC4 375 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 A0A1B0GUS0 222 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 GFRA3O60609 400 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 CT83Q5H943 113 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 KIR2DL5AQ8N109 375 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 ZIC4Q8N9L1 334 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 COA6Q5JTJ3 125 aaKnown RBP14.45□□□□□ -0.1
SYNE3-204ENST00000555759 IGHV1-2P23083 117 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 MRPL14Q6P1L8 145 aaKnown RBP14.45□□□□□ -0.1
SYNE3-204ENST00000555759 LYPD1Q8N2G4 141 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 SPAG8Q99932 426 aaPredicted RBP14.45□□□□□ -0.1
SYNE3-204ENST00000555759 LIME1Q9H400 295 aa14.45□□□□□ -0.1
SYNE3-204ENST00000555759 LOC102723996A0A087X1L8 192 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 IGKV1D-33P01593 117 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 IGKV1-33P01594 117 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 THSD7AQ9UPZ6 1657 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 TRAV12-3A0A0B4J271 114 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 IGLV3-19P01714 112 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 RNASE4P34096 147 aaKnown RBP14.44□□□□□ -0.1
SYNE3-204ENST00000555759 C2orf82Q6UX34 121 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 Q6ZRM9 215 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 VOPP1Q96AW1 172 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 ZNF492Q9P255 531 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 TSSC4Q9Y5U2 329 aaPredicted RBP14.44□□□□□ -0.1
SYNE3-204ENST00000555759 SELENOKQ9Y6D0 94 aa14.44□□□□□ -0.1
SYNE3-204ENST00000555759 NBR2O15453 112 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 IGHV3-23P01764 117 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 CELA3AP09093 270 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 ZNF562Q6V9R5 426 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 RNF144BQ7Z419 303 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 S4R3C0 116 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 TRGV3P03979 118 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 FAM201AQ5SY85 155 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 ZNF48Q96MX3 618 aaPredicted RBP14.43□□□□□ -0.1
SYNE3-204ENST00000555759 MLNRO43193 412 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 KLF12Q9Y4X4 402 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 EFNA2O43921 213 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 COX8AP10176 69 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 TNFRSF14Q92956 283 aa14.43□□□□□ -0.1
SYNE3-204ENST00000555759 TNFRSF6BO95407 300 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 NCR2O95944 276 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 STPG4Q8N801 248 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 SCN10AQ9Y5Y9 1956 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 TRBV20-1A0A075B6N2 111 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 IGHV3-66A0A0C4DH42 116 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 IGLL1P15814 213 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 CELA3BP08861 270 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 ZNF329Q86UD4 541 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 DUX5Q96PT3 197 aa14.42□□□□□ -0.1
SYNE3-204ENST00000555759 RSPO3Q9BXY4 272 aaPredicted RBP14.42□□□□□ -0.1
SYNE3-204ENST00000555759 DNAJC13O75165 2243 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 LCTP09848 1927 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 FOXC1Q12948 553 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 FGFBP3Q8TAT2 258 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 NPIPB5A8MRT5 1133 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 PPDPFLQ8WWR9 84 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 GGTLC3B5MD39 225 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 FREM3P0C091 2139 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 SELLP14151 372 aa14.41□□□□□ -0.1
SYNE3-204ENST00000555759 RPUSD1Q9UJJ7 312 aaKnown RBP14.41□□□□□ -0.1
SYNE3-204ENST00000555759 IGHV3-49A0A0A0MS15 119 aa14.4□□□□□ -0.1
SYNE3-204ENST00000555759 APOBEC3AP31941 199 aaPredicted RBP14.4□□□□□ -0.1
SYNE3-204ENST00000555759 PAX9P55771 341 aa14.4□□□□□ -0.1
SYNE3-204ENST00000555759 ZNF726P1Q15940 193 aa14.4□□□□□ -0.1
SYNE3-204ENST00000555759 MORN3Q6PF18 240 aaPredicted RBP14.4□□□□□ -0.1
SYNE3-204ENST00000555759 FAM231DQ6ZW35 169 aa14.4□□□□□ -0.1
SYNE3-204ENST00000555759 TMEM133Q9H2Q1 129 aa14.4□□□□□ -0.1
SYNE3-204ENST00000555759 ZNF138P52744 262 aa14.4□□□□□ -0.1
SYNE3-204ENST00000555759 FOXL2NBQ6ZUU3 175 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 TMEM167AQ8TBQ9 72 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 TMEM158Q8WZ71 300 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 PLSCR4Q9NRQ2 329 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 CABIN1Q9Y6J0 2220 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 LGALS1P09382 135 aaKnown RBP14.39□□□□□ -0.11
SYNE3-204ENST00000555759 PMS2P5A8MQ11 134 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 CCL21O00585 134 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 PPIFP30405 207 aaKnown RBP14.39□□□□□ -0.11
SYNE3-204ENST00000555759 GAGE12HA6NDE8 117 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 CCL3L1P16619 93 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 IL15RAQ13261 267 aa14.39□□□□□ -0.11
SYNE3-204ENST00000555759 CLEC19AQ6UXS0 136 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms