RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TCF24Q7RTU0 167 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 NUP37Q8NFH4 326 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 Q9H3A6 140 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 ZFYVE26Q68DK2 2539 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 IGHV1-3A0A0C4DH29 117 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 TRGV3P03979 118 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 COMPP49747 757 aaPredicted RBP12.24□□□□□ -0.45
CUX1-214ENST00000550008 PRSS8Q16651 343 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 FAM90A2PQ658T7 463 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 TMEM219Q86XT9 240 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 IGFBPL1Q8WX77 278 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 FAM168AQ92567 244 aa12.24□□□□□ -0.45
CUX1-214ENST00000550008 TCRBV4S1A1TA0A5B7 111 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 C10orf142B7Z368 130 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 C17orf58Q2M2W7 97 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 TMEM183AQ8IXX5 376 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 HIVEP3Q5T1R4 2406 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 TRAV1-1A0A0B4J248 108 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 K7ERU9 68 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 HOXA5P20719 270 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 LINC00479Q96M42 142 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 CEP192Q8TEP8 1941 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 C15orf65H3BRN8 121 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 CNTFRP26992 372 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 CA7P43166 264 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 TEX45Q8NA69 505 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 GCGP01275 180 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 ZNF726P1Q15940 193 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 TEX38Q6PEX7 206 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 Q8NFD4 153 aa12.23□□□□□ -0.45
CUX1-214ENST00000550008 RPL24P83731 157 aaKnown RBP12.22□□□□□ -0.45
CUX1-214ENST00000550008 LINC01551Q86U37 167 aa12.22□□□□□ -0.45
CUX1-214ENST00000550008 ASCL2Q99929 193 aa12.22□□□□□ -0.45
CUX1-214ENST00000550008 FAM169BQ8N8A8 192 aa12.22□□□□□ -0.45
CUX1-214ENST00000550008 MSRB2Q9Y3D2 182 aa12.22□□□□□ -0.45
CUX1-214ENST00000550008 YTHDF2Q9Y5A9 579 aaKnown RBP12.22□□□□□ -0.45
CUX1-214ENST00000550008 USP9XQ93008 2570 aaPredicted RBP12.22□□□□□ -0.45
CUX1-214ENST00000550008 TRAV30A0A087WSZ9 112 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 HIGD1CA8MV81 97 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 NPPCP23582 126 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 OR4B1Q8NGF8 309 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 TMEM191AQ9H0A3 160 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 BRD3OSQ6XYD6 125 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 PLA2G2EQ9NZK7 142 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 ZNF257Q9Y2Q1 563 aa12.21□□□□□ -0.45
CUX1-214ENST00000550008 PSG1P11464 419 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 CKS2P33552 79 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 ATP5G2Q06055 141 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 SEM1Q6ZVN7 128 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 SCRT1Q9BWW7 348 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 HLA-DRB1P01911 266 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 MSMPQ1L6U9 139 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 EXOC3-AS1Q8N2X6 119 aa12.21□□□□□ -0.46
CUX1-214ENST00000550008 BPTFQ12830 3046 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 TRAV8-1A0A0A6YYK1 113 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 TGFAP01135 160 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 RNASE2P10153 161 aaKnown RBP12.2□□□□□ -0.46
CUX1-214ENST00000550008 C2orf83Q53S99 150 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 RNF125Q96EQ8 232 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 COL25A1Q9BXS0 654 aaPredicted RBP12.2□□□□□ -0.46
CUX1-214ENST00000550008 MAP1LC3CQ9BXW4 147 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 TPSG1Q9NRR2 321 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 TRAV40A0A0B4J280 105 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 FAM90A9PA6NNJ1 464 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 CD33P20138 364 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 TM4SF20Q53R12 229 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 IGLV3-9A0A075B6K5 115 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 PAFAH1B2P68402 229 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 CRIP3Q6Q6R5 217 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 TMEM167AQ8TBQ9 72 aa12.2□□□□□ -0.46
CUX1-214ENST00000550008 SRRM4A7MD48 611 aaKnown RBP12.19□□□□□ -0.46
CUX1-214ENST00000550008 SERF1AO75920 110 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 KRTAP27-1Q3LI81 207 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 PARD6GQ9BYG4 376 aaPredicted RBP12.19□□□□□ -0.46
CUX1-214ENST00000550008 PMS2P5A8MQ11 134 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 ADMP35318 185 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 Q6ZPA2 131 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 ARL6IP6Q8N6S5 226 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 GPR82Q96P67 336 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 A0A1W2PPI3 338 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 GZMBP10144 247 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 Q6ZSR3 168 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 TMEM116Q8NCL8 245 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 SIGLEC9Q9Y336 463 aa12.19□□□□□ -0.46
CUX1-214ENST00000550008 NDUFS7O75251 213 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 LEPROTL1O95214 131 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 EPDR1Q9UM22 224 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 SOD3P08294 240 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 LOXP28300 417 aaPredicted RBP12.18□□□□□ -0.46
CUX1-214ENST00000550008 PLA2G5P39877 138 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 RHOGP84095 191 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 ASPHD1Q5U4P2 390 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 A0A1W2PRE2 83 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 BUB1B-PAK6H3BSN5 160 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 UBE2CO00762 179 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 DLX6P56179 175 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 VMO1Q7Z5L0 202 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 C5orf52A6NGY3 159 aa12.18□□□□□ -0.46
CUX1-214ENST00000550008 SMAD7O15105 426 aaKnown RBP12.18□□□□□ -0.46
CUX1-214ENST00000550008 BPESC1Q9GZL8 116 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms