RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	OR4X1	Q8NH49	305 aa		5.7	□□□□□ -1.5
SNHG1-223	ENST00000545440	RNF2	Q99496	336 aa		5.7	□□□□□ -1.5
SNHG1-223	ENST00000545440	RHPN1-AS1	Q9BWJ2	59 aa		5.7	□□□□□ -1.5
SNHG1-223	ENST00000545440	FNDC4	Q9H6D8	234 aa	Predicted RBP	5.7	□□□□□ -1.5
SNHG1-223	ENST00000545440	SHPK	Q9UHJ6	478 aa		5.7	□□□□□ -1.5
SNHG1-223	ENST00000545440	TRAV30	A0A087WSZ9	112 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	DUXB	A0A1W2PPF3	345 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	TMEM50A	O95807	157 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	NUDT3	O95989	172 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	SLC25A4	P12235	298 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	AKR1C4	P17516	323 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	CCR6	P51684	374 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	APOC4	P55056	127 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	SMCO1	Q147U7	214 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	PYDC2	Q56P42	97 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	TMEM128	Q5BJH2	165 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	SPANXN2	Q5MJ10	180 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	TOMM20L	Q6UXN7	152 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	CCDC190	Q86UF4	302 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	NOXA1	Q86UR1	476 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	LGI3	Q8N145	548 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440		Q8N1X5	172 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	TOMM5	Q8N4H5	51 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	RNASEH2C	Q8TDP1	164 aa	Known RBP	5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	GPR146	Q96CH1	333 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	SLC25A21	Q9BQT8	299 aa	Predicted RBP	5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	TMEM231	Q9H6L2	316 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	VSIR	Q9H7M9	311 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	HSPB7	Q9UBY9	170 aa		5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	PUS1	Q9Y606	427 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
SNHG1-223	ENST00000545440	IGHV3-49	A0A0A0MS15	119 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	TRAV2	A0A0B4J234	112 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	KIR2DL5B	A0A0G2JN68	375 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	KIR2DL5B	A0A0G2JPC4	375 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440		A0A1B0GU03	582 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	CEBPZOS	A8MTT3	80 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	UBE2C	O00762	179 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	IGKV1-17	P01599	117 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	NPY1R	P25929	384 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	CMC4	P56277	68 aa	Predicted RBP	5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	TNFRSF9	Q07011	255 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	ETFRF1	Q6IPR1	90 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	TMED4	Q7Z7H5	227 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	KIR2DL5A	Q8N109	375 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	LRTM2	Q8N967	370 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	OR1S2	Q8NGQ3	325 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	KIR2DL5B	Q8NHK3	375 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	METTL26	Q96S19	204 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	SRR	Q9GZT4	340 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	MRPL36	Q9P0J6	103 aa	Known RBP	5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	UBQLN2	Q9UHD9	624 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	TP53TG1	Q9Y2A0	90 aa		5.68	□□□□□ -1.5
SNHG1-223	ENST00000545440	STARD9	Q9P2P6	4700 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440		A0A1W2PS18	150 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	IGLC1	P0CG04	106 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	SLC25A6	P12236	298 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	CRYBB3	P26998	211 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	RND2	P52198	227 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	ATP5I	P56385	69 aa	Predicted RBP	5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	PAFAH1B2	P68402	229 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	RBMS2	Q15434	407 aa	Known RBP	5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	PRSS54	Q6PEW0	395 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	TCF24	Q7RTU0	167 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	LYZL2	Q7Z4W2	148 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	DTD1	Q8TEA8	209 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	TMEM170A	Q8WVE7	144 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	OVOL2	Q9BRP0	275 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	MAP6D1	Q9H9H5	199 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440		U3KQ87	197 aa		5.67	□□□□□ -1.5
SNHG1-223	ENST00000545440	TENM2	Q9NT68	2774 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	IGHV3OR16-13	A0A075B7E8	117 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	IGHV3-74	A0A0B4J1X5	117 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	FAM90A26	D6RGX4	464 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	PITX3	O75364	302 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	DFFB	O76075	338 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	APOH	P02749	345 aa	Predicted RBP	5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	NPPC	P23582	126 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	OR10J1	P30954	320 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	UBE2M	P61081	183 aa	Known RBP	5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	YPEL3	P61236	119 aa	Predicted RBP	5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	DEFB135	Q30KP9	77 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	TIGIT	Q495A1	244 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	TRIQK	Q629K1	86 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	ZFAND6	Q6FIF0	208 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	CENPS	Q8N2Z9	138 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	OR1S1	Q8NH92	325 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	GRAMD2B	Q96HH9	432 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	NARS2	Q96I59	477 aa	Known RBP	5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	MS4A6A	Q9H2W1	248 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	RBKS	Q9H477	322 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	TMED3	Q9Y3Q3	217 aa		5.66	□□□□□ -1.5
SNHG1-223	ENST00000545440	IGKV3-7	A0A075B6H7	116 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	LCE6A	A0A183	80 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	NAP1L6	A6NFF2	107 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	PRY	O14603	147 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	SFT2D2	O95562	160 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	TOMM40	O96008	361 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	IFNA10	P01566	189 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	MBP	P02686	304 aa	Predicted RBP	5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	P2RY1	P47900	373 aa		5.65	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms