RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 DYNLT1P63172 113 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 SNCBQ16143 134 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 TRIQKQ629K1 86 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 C15orf53Q8NAA6 179 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 LYSMD1Q96S90 227 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 NAA38Q9BRA0 125 aaKnown RBP2.76□□□□□ -1.97
NUP54-215ENST00000514313 ACER3Q9NUN7 267 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 PCTPQ9UKL6 214 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 MICAL3Q7RTP6 2002 aa2.76□□□□□ -1.97
NUP54-215ENST00000514313 TRAV14DV4A0A0A6YYC5 116 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 DUXBA0A1W2PPF3 345 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 FABP1P07148 127 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 SSR2P43308 183 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 BCL2L15Q5TBC7 163 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 PDZD9Q8IXQ8 264 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 LINC00311Q8N616 119 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 OR2T10Q8NGZ9 312 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 YPEL2Q96QA6 119 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 ADAT1Q9BUB4 502 aaKnown RBP2.75□□□□□ -1.97
NUP54-215ENST00000514313 PBDC1Q9BVG4 233 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 BCL2L10Q9HD36 194 aa2.75□□□□□ -1.97
NUP54-215ENST00000514313 SORL1Q92673 2214 aa2.74□□□□□ -1.97
NUP54-215ENST00000514313 UBL3O95164 117 aa2.74□□□□□ -1.97
NUP54-215ENST00000514313 ESRGQ1W209 222 aa2.74□□□□□ -1.97
NUP54-215ENST00000514313 SCGB2B2Q4G0G5 96 aa2.74□□□□□ -1.97
NUP54-215ENST00000514313 C3orf33Q6P1S2 294 aa2.74□□□□□ -1.97
NUP54-215ENST00000514313 RP1P56715 2156 aa2.74□□□□□ -1.97
NUP54-215ENST00000514313 FBN1P35555 2871 aaKnown RBP2.74□□□□□ -1.97
NUP54-215ENST00000514313 TRGV10A0A0A0MS01 117 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 NFYBP25208 207 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 TCTAP57738 103 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 C22orf39Q6P5X5 142 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 SOSTDC1Q6X4U4 206 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 Q8N2B8 174 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 SLC30A7Q8NEW0 376 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 CANT1Q8WVQ1 401 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 BIN3Q9NQY0 253 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 OR5AC2Q9NZP5 309 aa2.73□□□□□ -1.97
NUP54-215ENST00000514313 C2orf70A6NJV1 201 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 RIIAD1A6NNX1 92 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 KRTAP5-8O75690 187 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 UBE2BP63146 152 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 CDK5R1Q15078 307 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 GRINAQ7Z429 371 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 STX19Q8N4C7 294 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 PBOV1Q9GZY1 135 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 TRABDQ9H4I3 376 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 HS3ST2Q9Y278 367 aa2.72□□□□□ -1.97
NUP54-215ENST00000514313 RIMBP3CA6NJZ7 1639 aa2.71□□□□□ -1.97
NUP54-215ENST00000514313 RIMBP3BA6NNM3 1639 aa2.71□□□□□ -1.97
NUP54-215ENST00000514313 RIMBP3Q9UFD9 1639 aa2.71□□□□□ -1.97
NUP54-215ENST00000514313 TMEM256-PLSCR3K7ERE1 68 aa2.71□□□□□ -1.98
NUP54-215ENST00000514313 NDUFB3O43676 98 aa2.71□□□□□ -1.98
NUP54-215ENST00000514313 C10orf55Q5SWW7 151 aa2.71□□□□□ -1.98
NUP54-215ENST00000514313 MYH7BA7E2Y1 1941 aa2.71□□□□□ -1.98
NUP54-215ENST00000514313 ARHGEF28Q8N1W1 1705 aaKnown RBP2.71□□□□□ -1.98
NUP54-215ENST00000514313 GADD45GO95257 159 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 SERPINB1P30740 379 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 GLRXP35754 106 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 Q8IYB0 196 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 TMEM70Q9BUB7 260 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 REG4Q9BYZ8 158 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 PCBD2Q9H0N5 130 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 V9GYQ6 96 aa2.7□□□□□ -1.98
NUP54-215ENST00000514313 OBSL1O75147 1896 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 PPP5D1E7EU14 171 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 OR1I1O60431 355 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 MRPS14O60783 128 aaKnown RBP2.69□□□□□ -1.98
NUP54-215ENST00000514313 GGCTO75223 188 aaKnown RBP2.69□□□□□ -1.98
NUP54-215ENST00000514313 PIAS1O75925 651 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 LYZL6O75951 148 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 PROSCO94903 275 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 RNASE3P12724 160 aaKnown RBP2.69□□□□□ -1.98
NUP54-215ENST00000514313 INSL3P51460 131 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 PDE6HQ13956 83 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 ZNF418Q8TF45 676 aaPredicted RBP2.69□□□□□ -1.98
NUP54-215ENST00000514313 ZHX1-C8orf76Q96EF9 292 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 MALSU1Q96EH3 234 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 SELENOSQ9BQE4 189 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 OR2J1Q9GZK6 312 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 ROCK1Q13464 1354 aa2.69□□□□□ -1.98
NUP54-215ENST00000514313 TIMM17BO60830 172 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 APOA2P02652 100 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 PRB1P04280 392 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 CSN2P05814 226 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 IDO1P14902 403 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 BRS3P32247 399 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 RHOGP84095 191 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 DEFB113Q30KQ7 82 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 GPER1Q99527 375 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 C6orf62Q9GZU0 229 aaPredicted RBP2.68□□□□□ -1.98
NUP54-215ENST00000514313 DENND4CQ5VZ89 1909 aa2.68□□□□□ -1.98
NUP54-215ENST00000514313 PGRMC1O00264 195 aaKnown RBP2.67□□□□□ -1.98
NUP54-215ENST00000514313 DYNLT3P51808 116 aa2.67□□□□□ -1.98
NUP54-215ENST00000514313 SFT2D1Q8WV19 159 aa2.67□□□□□ -1.98
NUP54-215ENST00000514313 TEX37Q96LM6 180 aa2.67□□□□□ -1.98
NUP54-215ENST00000514313 GPX7Q96SL4 187 aaPredicted RBP2.67□□□□□ -1.98
NUP54-215ENST00000514313 SLC25A21Q9BQT8 299 aaPredicted RBP2.67□□□□□ -1.98
NUP54-215ENST00000514313 CYSTM1Q9H1C7 97 aa2.67□□□□□ -1.98
NUP54-215ENST00000514313 ANAPC1Q9H1A4 1944 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms