RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 OR1N2Q8NGR9 330 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 ST8SIA2Q92186 375 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 DPF1Q92782 380 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 RCC1LQ96I51 464 aaKnown RBP14.89□□□□□ -0.03
USP39-218ENST00000493829 ZNF414Q96IQ9 312 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 ATP6V0BQ99437 205 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 PBDC1Q9BVG4 233 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 SLC25A32Q9H2D1 315 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 SLC45A2Q9UMX9 530 aa14.89□□□□□ -0.03
USP39-218ENST00000493829 LINC01619G3V211 115 aa14.88□□□□□ -0.03
USP39-218ENST00000493829 IL4P05112 153 aa14.88□□□□□ -0.03
USP39-218ENST00000493829 HOXD3P31249 432 aaPredicted RBP14.88□□□□□ -0.03
USP39-218ENST00000493829 RELQ04864 619 aaPredicted RBP14.88□□□□□ -0.03
USP39-218ENST00000493829 FAM209BQ5JX69 171 aa14.88□□□□□ -0.03
USP39-218ENST00000493829 ZNF600Q6ZNG1 722 aa14.88□□□□□ -0.03
USP39-218ENST00000493829 STOML3Q8TAV4 291 aa14.88□□□□□ -0.03
USP39-218ENST00000493829 GINS3Q9BRX5 216 aa14.88□□□□□ -0.03
USP39-218ENST00000493829 FABP1P07148 127 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 YPEL3P61236 119 aaPredicted RBP14.87□□□□□ -0.03
USP39-218ENST00000493829 B2MP61769 119 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 BAP18Q8IXM2 172 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 C20orf24Q9BUV8 137 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 ZNF320A2RRD8 509 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 ZNF207O43670 478 aaKnown RBP14.87□□□□□ -0.03
USP39-218ENST00000493829 GCSAMLQ5JQS6 135 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 FFAR4Q5NUL3 377 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 UNQ9165/PRO28630Q6UXU0 137 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 OR51G1Q8NGK1 321 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 Q8WTZ3 238 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 TMED6Q8WW62 240 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 ARV1Q9H2C2 271 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 SLC39A9Q9NUM3 307 aa14.87□□□□□ -0.03
USP39-218ENST00000493829 CCL24O00175 119 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 ORM2P19652 201 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 EIF5AP63241 154 aaKnown RBP14.86□□□□□ -0.03
USP39-218ENST00000493829 PRR20EP86478 221 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 PRR20CP86479 221 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 PRR20DP86480 221 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 PRR20BP86481 221 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 PRR20AP86496 221 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 TOMM20LQ6UXN7 152 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 OR1B1Q8NGR6 318 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 OR2G3Q8NGZ4 309 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 GNPNAT1Q96EK6 184 aaPredicted RBP14.86□□□□□ -0.03
USP39-218ENST00000493829 MDFIQ99750 246 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 ZNF747Q9BV97 191 aa14.86□□□□□ -0.03
USP39-218ENST00000493829 TSPAN15O95858 294 aa14.85□□□□□ -0.03
USP39-218ENST00000493829 RPL29P47914 159 aaKnown RBP14.85□□□□□ -0.03
USP39-218ENST00000493829 SYNJ2BPP57105 145 aa14.85□□□□□ -0.03
USP39-218ENST00000493829 SELENOTP62341 195 aa14.85□□□□□ -0.03
USP39-218ENST00000493829 RNF125Q96EQ8 232 aa14.85□□□□□ -0.03
USP39-218ENST00000493829 ZFAND3Q9H8U3 227 aa14.85□□□□□ -0.03
USP39-218ENST00000493829 KCNIP2Q9NS61 270 aa14.85□□□□□ -0.03
USP39-218ENST00000493829 CFDP00746 253 aaPredicted RBP14.84□□□□□ -0.03
USP39-218ENST00000493829 SPP1P10451 314 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 ZP3P21754 424 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 USF2Q15853 346 aaPredicted RBP14.84□□□□□ -0.03
USP39-218ENST00000493829 PSMG3Q9BT73 122 aaPredicted RBP14.84□□□□□ -0.03
USP39-218ENST00000493829 VSIRQ9H7M9 311 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 TIMM9Q9Y5J7 89 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 NDUFA4O00483 81 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 OR5G3P0C626 314 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 RIPPLY3P57055 190 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 RAB2AP61019 212 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 ALKAL2Q6UX46 152 aa14.84□□□□□ -0.03
USP39-218ENST00000493829 IGHV3-49A0A0A0MS15 119 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 COX7A2P2O60397 106 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 FHL3Q13643 280 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 FAM74A1Q5RGS3 127 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 Q6ZRG5 221 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 TMEM190Q8WZ59 177 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 UHRF2Q96PU4 802 aa14.83□□□□□ -0.04
USP39-218ENST00000493829 WI2-2373I1.2A0A1W2PRP0 233 aa14.82□□□□□ -0.04
USP39-218ENST00000493829 EIF3GO75821 320 aaKnown RBP eCLIP14.82□□□□□ -0.04
USP39-218ENST00000493829 PF4P02776 101 aa14.82□□□□□ -0.04
USP39-218ENST00000493829 EDN2P20800 178 aa14.82□□□□□ -0.04
USP39-218ENST00000493829 FAM106AQ4KMX7 169 aa14.82□□□□□ -0.04
USP39-218ENST00000493829 DLX4Q92988 240 aaPredicted RBP14.82□□□□□ -0.04
USP39-218ENST00000493829 GPHB5Q86YW7 130 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 C1QL4Q86Z23 238 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 PLA2G2EQ9NZK7 142 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 COL6A5A8TX70 2615 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 IGHV3OR16-13A0A075B7E8 117 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 IGHV3-74A0A0B4J1X5 117 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 IGHV3-66A0A0C4DH42 116 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 HYPMO75409 117 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 TM4SF20Q53R12 229 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 AKR1C8PQ5T2L2 129 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 SHISA2Q6UWI4 295 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 PATE2Q6UY27 113 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 SELENOKQ9Y6D0 94 aa14.81□□□□□ -0.04
USP39-218ENST00000493829 SEC11BP0C7V7 166 aa14.8□□□□□ -0.04
USP39-218ENST00000493829 KLF5Q13887 457 aaPredicted RBP14.8□□□□□ -0.04
USP39-218ENST00000493829 FAM122CQ6P4D5 195 aa14.8□□□□□ -0.04
USP39-218ENST00000493829 TMEM37Q8WXS4 190 aa14.8□□□□□ -0.04
USP39-218ENST00000493829 RABAC1Q9UI14 185 aa14.8□□□□□ -0.04
USP39-218ENST00000493829 HIGD1AQ9Y241 93 aa14.8□□□□□ -0.04
USP39-218ENST00000493829 STAB1Q9NY15 2570 aa14.79□□□□□ -0.04
USP39-218ENST00000493829 MYCNOSP40205 109 aa14.79□□□□□ -0.04
USP39-218ENST00000493829 SERF2P84101 59 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms