RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 FBXO5Q9UKT4 447 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 TAF1LQ8IZX4 1826 aa0.59□□□□□ -2.32
SMC4-223ENST00000493695 PEAK1Q9H792 1746 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 TRAV3A0A0B4J244 114 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 ZNF736B4DX44 427 aaPredicted RBP0.58□□□□□ -2.32
SMC4-223ENST00000493695 CTXN2P0C2S0 81 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 SLC25A40Q8TBP6 338 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 TEX47Q8TBZ9 253 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 C4orf3Q8WVX3 66 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 C14orf132Q9NPU4 83 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 ACER3Q9NUN7 267 aa0.58□□□□□ -2.32
SMC4-223ENST00000493695 CHCHD2Q9Y6H1 151 aaPredicted RBP0.58□□□□□ -2.32
SMC4-223ENST00000493695 COL1A1P02452 1464 aaPredicted RBP0.58□□□□□ -2.32
SMC4-223ENST00000493695 AHNAKQ09666 5890 aaKnown RBP0.58□□□□□ -2.32
SMC4-223ENST00000493695 TMEM114B3SHH9 223 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 SMIM17P0DL12 118 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 CYBAP13498 195 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 MPV17LQ2QL34 196 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 KRTAP19-3Q7Z4W3 81 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 Q8IYB0 196 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 PATE1Q8WXA2 126 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 KIF1BO60333 1816 aa0.57□□□□□ -2.32
SMC4-223ENST00000493695 FMN1Q68DA7 1419 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 E9PCH4 1651 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 TRAV4A0A0B4J268 109 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 OR7C1O76099 320 aaPredicted RBP0.56□□□□□ -2.32
SMC4-223ENST00000493695 DYNLT1P63172 113 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 OR2T10Q8NGZ9 312 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 TMEM126AQ9H061 195 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 BCL2L10Q9HD36 194 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 CDC42SE1Q9NRR8 79 aa0.56□□□□□ -2.32
SMC4-223ENST00000493695 PCF11O94913 1555 aaKnown RBP0.56□□□□□ -2.32
SMC4-223ENST00000493695 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.55□□□□□ -2.32
SMC4-223ENST00000493695 CYB5BO43169 146 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 DHFRP00374 187 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 ANP32AP39687 249 aaKnown RBP0.55□□□□□ -2.32
SMC4-223ENST00000493695 Q8N6K4 173 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 LINC00301Q8NCQ3 95 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 OR11H6Q8NGC7 330 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 FAM172AQ8WUF8 416 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 PPP1R14BQ96C90 147 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 SLAMF6Q96DU3 332 aa0.55□□□□□ -2.32
SMC4-223ENST00000493695 UTP11Q9Y3A2 253 aaKnown RBP0.55□□□□□ -2.32
SMC4-223ENST00000493695 TRBV19A0A075B6N1 114 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 FAM159BA6NKW6 160 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 C1orf196B1AJZ1 125 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 PIGPP57054 158 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 TEX261Q6UWH6 196 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 MNS1Q8NEH6 495 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 AMELYQ99218 206 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 SIGMAR1Q99720 223 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 PRADC1Q9BSG0 188 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 U3KQ87 197 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 OBSL1O75147 1896 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 TNS3Q68CZ2 1445 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 MYH7BA7E2Y1 1941 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 KIAA1549Q9HCM3 1950 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 DOCK3Q8IZD9 2030 aa0.54□□□□□ -2.32
SMC4-223ENST00000493695 CNTRLQ7Z7A1 2325 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 CCDC160A6NGH7 325 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 CCL16O15467 120 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 CST2P09228 141 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 ZNF25P17030 456 aaPredicted RBP0.53□□□□□ -2.32
SMC4-223ENST00000493695 ROMO1P60602 79 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 FADDQ13158 208 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 RRN3P1Q2M238 152 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 C22orf39Q6P5X5 142 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 KRTAP26-1Q6PEX3 210 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 LINC00467Q9BRT7 94 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 NMNAT1Q9HAN9 279 aaPredicted RBP0.53□□□□□ -2.32
SMC4-223ENST00000493695 SCN10AQ9Y5Y9 1956 aa0.53□□□□□ -2.32
SMC4-223ENST00000493695 PLXNA4Q9HCM2 1894 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 TRBV6-4A0A1B0GX49 114 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 CCL25O15444 150 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 GADD45GO95257 159 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 DEFA3P59666 94 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 EIF5AP63241 154 aaKnown RBP0.52□□□□□ -2.33
SMC4-223ENST00000493695 AKIRIN2Q53H80 203 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 LYRM7Q5U5X0 104 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 CLECL1Q8IZS7 167 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 SLC30A7Q8NEW0 376 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 STAG3L4Q8TBR4 150 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 GNPDA2Q8TDQ7 276 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 BTF3L4Q96K17 158 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 TMEM70Q9BUB7 260 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 SCN3AQ9NY46 2000 aa0.52□□□□□ -2.33
SMC4-223ENST00000493695 CLDN25C9JDP6 229 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 E2F6O75461 281 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 C1QBP02746 253 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 ERP29P30040 261 aaKnown RBP0.51□□□□□ -2.33
SMC4-223ENST00000493695 SRP14P37108 136 aaKnown RBP0.51□□□□□ -2.33
SMC4-223ENST00000493695 ATP5G3P48201 142 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 RHOBP62745 196 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 LIN52Q52LA3 116 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 SPRNQ5BIV9 151 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 CAMSAP1Q5T5Y3 1602 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 ZNF833PQ6ZTB9 187 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 PDZD9Q8IXQ8 264 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 KIFC1Q9BW19 673 aa0.51□□□□□ -2.33
SMC4-223ENST00000493695 C6orf62Q9GZU0 229 aaPredicted RBP0.51□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms