RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGKV1D-17A0A075B6S4 117 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 P01737 135 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ORM2P19652 201 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RPL8P62917 257 aaKnown RBP8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 GP6Q9HCN6 339 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 DYSFO75923 2080 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 A0A1W2PS18 150 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CD5LO43866 347 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LIPFP07098 398 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 PRSS1P07477 247 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ZNF726P1Q15940 193 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MSMPQ1L6U9 139 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ZNF714Q96N38 554 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TMEM140Q9NV12 185 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 KALRNO60229 2985 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TANC2Q9HCD6 1990 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 HIVEP2P31629 2446 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CLEC3BP05452 202 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SMIM13P0DJ93 91 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 Q6P435 159 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SSBP4Q9BWG4 385 aaPredicted RBP8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ZNF257Q9Y2Q1 563 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RNF115Q9Y4L5 304 aa8.85□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TRAV3A0A0B4J244 114 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LINC00473A8K010 186 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 C17orf100A8MU93 164 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 J3QR06 171 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CT45A10P0DMU9 189 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 Q0VG73 95 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 C10orf55Q5SWW7 151 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 C5orf30Q96GV9 206 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 EAF1Q96JC9 268 aaPredicted RBP8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 THYN1Q9P016 225 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 INSIG2Q9Y5U4 225 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SORL1Q92673 2214 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A10PA6NDY2 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A18PA6NE21 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A16PA6NEW6 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A20PA6NIJ5 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A8PA6NJQ4 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A7PA6NKC0 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A22PA8MWA6 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A12PA8MX19 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A5PA8MXJ8 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A23PA8MXZ1 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGLV3-1P01715 115 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A15PP0C7V4 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A13PP0C7W8 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A14PP0C7W9 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM90A24PP0C7X0 464 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SEC11AP67812 179 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 ARL16Q0P5N6 197 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 LYPD2Q6UXB3 125 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 TMEM136Q6ZRR5 245 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FLNBO75369 2602 aaKnown RBP8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MBD3L4A6NDZ8 208 aaPredicted RBP8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MBD3L3A6NE82 208 aaPredicted RBP8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 FAM181BA6NEQ2 426 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MBD3L5A6NJ08 208 aaPredicted RBP8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 A8MWL6 223 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SAP30O75446 220 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CGAP01215 116 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 SCGB1C2P0DMR2 95 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CT45A6P0DMU7 189 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CT45A5P0DMU8 189 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CT45A7P0DMV0 189 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 IGLL1P15814 213 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CT45A1Q5HYN5 189 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 OR5A1Q8NGJ0 315 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 CT45A3Q8NHU0 189 aa8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 MBD3L2Q8NHZ7 208 aaPredicted RBP8.84□□□□□ -0.99
MSH5-SAPCD1-207ENST00000493662 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 F2Z2F3 143 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 COL8A1P27658 744 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 CRIP3Q6Q6R5 217 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 PCSK4Q6UW60 755 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 ANAPC10Q9UM13 185 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 RELNP78509 3460 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 IGHV2-26A0A0B4J1V2 119 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 LOC389332A0A1B0GUA5 103 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 RRHO14718 337 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 RBP4P02753 201 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 PPBPP02775 128 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 NBL1P41271 181 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 YPEL3P61236 119 aaPredicted RBP8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 LINC00596Q86U02 117 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 TSKUQ8WUA8 353 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 ERHP84090 104 aaKnown RBP8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 KLRB1Q12918 225 aa8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 FLYWCH2Q96CP2 140 aaKnown RBP8.83□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 A0A0G2JLM5 398 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 FAM231BA6NCW3 169 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 MMP23AO75900 390 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 IGKV1-5P01602 117 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 Q6ZPA2 131 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 PERPQ96FX8 193 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 PGLYRP4Q96LB8 373 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 RAB1BQ9H0U4 201 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 IGKV3-7A0A075B6H7 116 aa8.82□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 SAA2-SAA4A0A096LPE2 208 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 164.5 ms