RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LRRC75A-AS1Q8N1F1 130 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 WFDC11Q8NEX6 87 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 AJUBAQ96IF1 538 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 HIF1ANQ9NWT6 349 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 FNDC10F2Z333 226 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 GGCTO75223 188 aaKnown RBP9.68□□□□□ -0.86
HDAC6-230ENST00000488543 MPDU1O75352 247 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 GATA2P23769 480 aaPredicted RBP9.68□□□□□ -0.86
HDAC6-230ENST00000488543 PKIAP61925 76 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 SSX2Q16385 188 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 MINOS1Q5TGZ0 78 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 MBD6Q96DN6 1003 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 FBXL15Q9H469 300 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 MINOS1-NBL1R4GNA1 71 aa9.68□□□□□ -0.86
HDAC6-230ENST00000488543 IGLC7A0M8Q6 106 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 AVPP01185 164 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 ERHP84090 104 aaKnown RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 JOSD1Q15040 202 aaPredicted RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 SGMS2Q8NHU3 365 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 NPVFQ9HCQ7 196 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 FLNAP21333 2647 aaKnown RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 B4DSR2 109 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 TSTD3H0UI37 97 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 TGOLN2O43493 480 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 RPL27AP46776 148 aaKnown RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 COMPP49747 757 aaPredicted RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 PPP1R27Q86WC6 154 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 MRPL41Q8IXM3 137 aaKnown RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 PIP4P2Q8N4L2 257 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 OCC1Q8TAD7 63 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 ACANP16112 2415 aa9.67□□□□□ -0.86
HDAC6-230ENST00000488543 FLNBO75369 2602 aaKnown RBP9.67□□□□□ -0.86
HDAC6-230ENST00000488543 CENPVL3A0A0U1RRI6 287 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 OOSP1A8MZH6 123 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 F6UZH7 168 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 FCN1O00602 326 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 OPRK1P41145 380 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 UBE2E1P51965 193 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 TNXAQ16473 311 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 MLANAQ16655 118 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 CIARTQ8N365 385 aaPredicted RBP9.66□□□□□ -0.86
HDAC6-230ENST00000488543 C7orf69Q9H7B7 122 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 TRAPPC1Q9Y5R8 145 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 SOX21Q9Y651 276 aaPredicted RBP9.66□□□□□ -0.86
HDAC6-230ENST00000488543 CR1P17927 2039 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 TEX22C9J3V5 150 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 K7EN84 100 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 SPINK4O60575 86 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 TGFAP01135 160 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 RPL15P61313 204 aaKnown RBP9.66□□□□□ -0.86
HDAC6-230ENST00000488543 CD69Q07108 199 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 OR5I1Q13606 314 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 RUSC1-AS1Q66K80 236 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 PVRIGQ6DKI7 326 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 BRD3OSQ6XYD6 125 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 REC114Q7Z4M0 266 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 NPBQ8NG41 125 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 TBL2Q9Y4P3 447 aaKnown RBP9.66□□□□□ -0.86
HDAC6-230ENST00000488543 MXRA5Q9NR99 2828 aa9.66□□□□□ -0.86
HDAC6-230ENST00000488543 NDUFA3O95167 84 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 MOSP00540 346 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 REG1AP05451 166 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 CBLN1P23435 193 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 ADMP35318 185 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 LGALS4P56470 323 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 Q8N6K4 173 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 STPG3Q8N7X2 389 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 OR5R1Q8NH85 324 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 MISP3Q96FF7 219 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 SFRP2Q96HF1 295 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 KCNIP2Q9NS61 270 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 MYO9AB2RTY4 2548 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 F2Z2F3 143 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 NBR2O15453 112 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 STAG3L2P0CL84 134 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 STAG3L3P0CL85 134 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 IGHV4-38-2P0DP08 117 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 AREGP15514 252 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 SAA4P35542 130 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 SRP14P37108 136 aaKnown RBP9.65□□□□□ -0.86
HDAC6-230ENST00000488543 CNN1P51911 297 aaKnown RBP9.65□□□□□ -0.86
HDAC6-230ENST00000488543 LOXL1Q08397 574 aaPredicted RBP9.65□□□□□ -0.86
HDAC6-230ENST00000488543 EBI3Q14213 229 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 CCDC144NLQ6NUI1 221 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 KCNIP4Q6PIL6 250 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 TEPPQ6URK8 271 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 MIR17HGQ75NE6 70 aa9.65□□□□□ -0.86
HDAC6-230ENST00000488543 IGKV1OR2-108A0A075B7D4 117 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 TRAV40A0A0B4J280 105 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 MDFIC2A0A1B0GVS7 189 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 PDE6DO43924 150 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 GCHFRP30047 84 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 MFAP2P55001 183 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 MMDQ15546 238 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 C19orf35Q6ZS72 473 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 TMEM144Q7Z5S9 345 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 FNDC4Q9H6D8 234 aaPredicted RBP9.64□□□□□ -0.87
HDAC6-230ENST00000488543 EREGO14944 169 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 TMEM249Q2WGJ8 235 aa9.64□□□□□ -0.87
HDAC6-230ENST00000488543 TEX38Q6PEX7 206 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 107.4 ms