RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 Q8WTZ3 238 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 WDR12Q9GZL7 423 aaKnown RBP9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 NAA60Q9H7X0 242 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 NRN1Q9NPD7 142 aa9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.88□□□□□ -0.83
SQSTM1-208ENST00000485412 APOBP04114 4563 aaKnown RBP9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 RPS10-NUDT3A0A1W2PQS6 291 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 CCDC160A6NGH7 325 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 PSG1P11464 419 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 HLA-DRB4P13762 266 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 TBPP20226 339 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 CTF1Q16619 201 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 TMEM268Q5VZI3 342 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 STEAP1BQ6NZ63 245 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 SIGLEC15Q6ZMC9 328 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF705AQ6ZN79 300 aaPredicted RBP9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 OR52E5Q8NH55 327 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 RBPMSQ93062 196 aaKnown RBP9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 C1QTNF4Q9BXJ3 329 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 HLA-DRB4X5D2U9 266 aa9.87□□□□□ -0.83
SQSTM1-208ENST00000485412 IGHV3OR16-12A0A075B7B8 117 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 TEX13DA0A0J9YY54 714 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 CEBPZOSA8MTT3 80 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF705FA8MVS1 300 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 GABARAPO95166 117 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 TOMM40O96008 361 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF705DP0CH99 300 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF705BP0CI00 300 aaPredicted RBP9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 SLC25A4P12235 298 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 EIF2B2P49770 351 aaKnown RBP9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 TAS2R19P59542 299 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 C1orf134Q5TEV5 83 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 MZT2AQ6P582 158 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 Q6ZR54 194 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF709Q8N972 641 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 RNASEH2CQ8TDP1 164 aaKnown RBP9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 PTTG2Q9NZH5 202 aa9.86□□□□□ -0.83
SQSTM1-208ENST00000485412 CRYM-AS1A6NIL9 109 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 H3BMQ9 156 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 NOL3O60936 208 aaKnown RBP9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 SCGB2A1O75556 95 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 RD3LP0DJH9 198 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 AP2S1P53680 142 aaPredicted RBP9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 NUTF2P61970 127 aaKnown RBP9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 SNRPD3P62318 126 aaKnown RBP9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 NMSQ5H8A3 153 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 FAM219AQ8IW50 185 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 OR4C16Q8NGL9 310 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 SLC35B3Q9H1N7 401 aa9.85□□□□□ -0.83
SQSTM1-208ENST00000485412 IGKV1D-37A0A075B6S9 117 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 C16orf90A8MZG2 172 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 F6UB75 175 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 SPART-AS1P0CW21 52 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF182P17025 639 aaPredicted RBP9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 ZNF90Q03938 601 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 MAPKAPK5-AS1Q8N8E1 139 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 RNF125Q96EQ8 232 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 FAM210BQ96KR6 192 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 PBDC1Q9BVG4 233 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 GPR132Q9UNW8 380 aa9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 C14orf166Q9Y224 244 aaKnown RBP9.84□□□□□ -0.83
SQSTM1-208ENST00000485412 DNAH5Q8TE73 4624 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 GABARAPH6UMI1 98 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 SOCS3O14543 225 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 CTDSP2O14595 271 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 B3GALNT1O75752 331 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 NKX2-1P43699 371 aaPredicted RBP9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 FAM222AQ5U5X8 452 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 LINC00052Q96N35 136 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 NEU1Q99519 415 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 SAV1Q9H4B6 383 aaPredicted RBP9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 DKK2Q9UBU2 259 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 TMEM56-RWDD3S4R434 201 aa9.83□□□□□ -0.84
SQSTM1-208ENST00000485412 TMEM189A5PLL7 270 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 CDK2AP2O75956 126 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 HTN3P15516 51 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 RNF212Q495C1 297 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 C1orf158Q8N1D5 194 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 OR51S1Q8NGJ8 323 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 AP3S1Q92572 193 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 RBKSQ9H477 322 aa9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 SEPSECSQ9HD40 501 aaKnown RBP9.82□□□□□ -0.84
SQSTM1-208ENST00000485412 GSTZ1O43708 216 aaPredicted RBP9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 PRM2P04554 102 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 SULT1A3P0DMM9 295 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 SULT1A4P0DMN0 295 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 SUPT4H1P63272 117 aaKnown RBP9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 OR2F1Q13607 317 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 GAMTQ14353 236 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 LYZL2Q7Z4W2 148 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 OR4B1Q8NGF8 309 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 SMIM4Q8WVI0 70 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 C20orf173Q96LM9 149 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 C17orf77Q96MU5 243 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 HSPB7Q9UBY9 170 aa9.81□□□□□ -0.84
SQSTM1-208ENST00000485412 TEX48A0A1B0GUV7 120 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 RGS5O15539 181 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 LYZP61626 148 aa9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 KLF9Q13886 244 aaPredicted RBP9.8□□□□□ -0.84
SQSTM1-208ENST00000485412 SPCS2Q15005 226 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms