RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 SCGB3A2Q96PL1 93 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 RNF2Q99496 336 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 RHPN1-AS1Q9BWJ2 59 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 SLIRPQ9GZT3 109 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 CACFD1Q9UGQ2 172 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 PAIP2BQ9ULR5 123 aaKnown RBP5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 GPR132Q9UNW8 380 aa5.04□□□□□ -1.6
CCDC88A-213ENST00000476903 STARD9Q9P2P6 4700 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 IGHV3-49A0A0A0MS15 119 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 KIR2DL5BA0A0G2JN68 375 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 KIR2DL5BA0A0G2JPC4 375 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 LCE6AA0A183 80 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 RPS10-NUDT3A0A1W2PQS6 291 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 H0Y8G0 127 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 UBE2CO00762 179 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 CLN5O75503 358 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 TMEM50AO95807 157 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 TNFSF8P32971 234 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 FAUP35544 74 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 HTR2BP41595 481 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 PAFAH1B2P68402 229 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 BSXQ3C1V8 233 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 TMEM268Q5VZI3 342 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 TOMM20LQ6UXN7 152 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 Q6ZWC4 215 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 STX12Q86Y82 276 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 SELENOHQ8IZQ5 122 aaKnown RBP5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 KIR2DL5AQ8N109 375 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 OR4X1Q8NH49 305 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 KIR2DL5BQ8NHK3 375 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 MCFD2Q8NI22 146 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 LHFPL5Q8TAF8 219 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 IL22RA2Q969J5 263 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 RAB24Q969Q5 203 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 GPR146Q96CH1 333 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 GALNT14Q96FL9 552 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 OVOL2Q9BRP0 275 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 MCUBQ9NWR8 336 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 CACNG5Q9UF02 275 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 TP53TG1Q9Y2A0 90 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 KCNIP3Q9Y2W7 256 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 PUS1Q9Y606 427 aaKnown RBP eCLIP5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 RYR2Q92736 4967 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 TENM2Q9NT68 2774 aa5.03□□□□□ -1.6
CCDC88A-213ENST00000476903 CSMD3Q7Z407 3707 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 IGKV3-7A0A075B6H7 116 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 IGHV3OR16-13A0A075B7E8 117 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TRAV30A0A087WSZ9 112 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 IGHV3-74A0A0B4J1X5 117 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 PIGBOS1A0A0B4J2F0 54 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 A0A1W2PS18 150 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 CEBPZOSA8MTT3 80 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 SPRY2O43597 315 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 SULT1A3P0DMM9 295 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 SULT1A4P0DMN0 295 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 ANXA3P12429 323 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 RPL35AP18077 110 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 NPPCP23582 126 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 NUP62P37198 522 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TFPI2P48307 235 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 AP3S2P59780 193 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 SRPXP78539 464 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM187Q14656 261 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 DEFB135Q30KP9 77 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 C2orf83Q53S99 150 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 LCE1EQ5T753 118 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 FAM90A2PQ658T7 463 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 ETFRF1Q6IPR1 90 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TCF24Q7RTU0 167 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 APRG1Q8IVJ8 170 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 GBGT1Q8N5D6 347 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 SLC24A4Q8NFF2 622 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 RNASEH2CQ8TDP1 164 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM230Q96A57 120 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 NARS2Q96I59 477 aaKnown RBP5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 METTL26Q96S19 204 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 SOSTQ9BQB4 213 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 FNDC4Q9H6D8 234 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM231Q9H6L2 316 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 VSIRQ9H7M9 311 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 HEYLQ9NQ87 328 aaPredicted RBP5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 NUDT15Q9NV35 164 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TMEM56-RWDD3S4R434 201 aa5.02□□□□□ -1.61
CCDC88A-213ENST00000476903 TRAV2A0A0B4J234 112 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 A0A0B4J2A0 478 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 IGHV3-66A0A0C4DH42 116 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 A0A1B0GU03 582 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 XKRY2A2RUG3 117 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 CCDC160A6NGH7 325 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 DNASE2O00115 360 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 ATP6V1G1O75348 118 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 DFFBO76075 338 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 JTBO76095 146 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 NXPH3O95157 252 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 APOHP02749 345 aaPredicted RBP5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 SLC25A4P12235 298 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 AKR1C4P17516 323 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 NPY1RP25929 384 aa5.01□□□□□ -1.61
CCDC88A-213ENST00000476903 CCR6P51684 374 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms